Rice gene details
Searching for LOC_Os03g46470 [metal cation transporter, putative, expressed ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid  
2 GO:0010043 response to zinc ion  
3 GO:0010106 cellular response to iron ion starvation  
4 GO:0034224 cellular response to zinc ion starvation  
5 GO:0006810 transport (RGAP)
6 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 EO:0007242 iron nutrient regimen (+)
3 EO:0007412 zinc sulphate regimen (+)
4 EO:0007413 manganese sulfate regimen (+)
5 EO:0007527 cupric sulfate (+)
6 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
7 MCE:1000143 iron deficiency treatment (+)
8 MCE:1000158 zinc chloride regimen (ZnCl2) (+)
9 MCE:1000161 iron (III)-ethylenediaminetetraacetic acid (EDTA) (+)
10 MCE:1000162 copper deficiency treatment (+)
11 MCE:1000163 zinc deficiency treatment (+)
12 MCE:1000164 manganese deficiency treatment (+)
13 MCE:1000176 silver thiosulphate regimen (+)
14 MCE:1000177 cobalt chloride regimen (CoCl2) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQDY056 panicle length
2 AQDY058 panicle length
3 CQE18 yield
4 CQAS27 plant height
5 CQE26 carbon content
6 CQE27 grain number
7 CQF5 soluble protein content
8 AQAL004 deep root dry weight
9 AQAL010 deep root to shoot ratio
10 AQGC006 penetrated root number
11 AQGC012 penetrated root number
12 AQGC015 root penetration index
13 AQF008 seed dormancy
14 AQF026 seed dormancy
15 AQF043 awn length
16 AQF060 anther length
17 CQAH11 seed dormancy
18 CQAH12 seed dormancy

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007016 4 flowering (+)
3 PO:0007050 FR.03 late stage of fruit ripening (+)
4 PO:0007130 B reproductive growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009010 seed (+)
6 PO:0020103 flag leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 TO:0000207 plant height (+)
2 TO:0000346 tiller number (+)
3 TO:0000495 chlorophyll content (+)
4 TO:0006049 iron concentration (+)
5 TO:0006053 zinc concentration (+)
6 TO:0006059 cadmium concentration (+)
7 TO:0006060 leaf chlorosis (+)
8 TO:0020089 iron content (+)
9 TO:0020090 zinc content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Wu Jiaojiao; Wang Chuang; Zheng Luqing; Wang Lu; Chen Yunlong; Whelan James; Shou Huixia; Ethylene is involved in the regulation of iron homeostasis by regulating the expression of iron-acquisition-related genes in Oryza sativa. Journal of Experimental Botany 2011:62
PMID [21112958]


Zheng Luqing; Ying Yinghui; Wang Lu; Wang Fang; Whelan James; Shou Huixia; Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa. BMC Plant Biology 2010:10
PMID [20699001]


Lee Sichul; An Gynheung; Over-expression of OsIRT1 leads to increased iron and zinc accumulations in rice. Plant, Cell & Environment 2009:32
PMID [19183299]


Yokosho Kengo; Yamaji Naoki; Ueno Daisei; Mitani Namiki; Ma Jian Feng; OsFRDL1 is a citrate transporter required for efficient translocation of iron in rice. Plant Physiology 2009:149
PMID [19011004]


Ogo Yuko; Itai Reiko Nakanishi; Nakanishi Hiromi; Kobayashi Takanori; Takahashi Michiko; Mori Satoshi; Nishizawa Naoko K; The rice bHLH protein OsIRO2 is an essential regulator of the genes involved in Fe uptake under Fe-deficient conditions. The Plant Journal 2007:51
PMID [17559517]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India