Rice gene details
Searching for LOC_Os03g49990 [GRAS family transcription factor domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g49990.1 626 241 621 PF03514.6 GRAS
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -2
N22 Root FC
  -1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009723 response to ethylene stimulus  
2 GO:0009725 response to hormone stimulus  
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
5 GO:0008150 biological_process (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0007165 signal transduction (RGAP)
8 GO:0006810 transport (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0009791 post-embryonic development (RGAP)
12 GO:0000003 reproduction (RGAP)
13 GO:0008152 metabolic process (RGAP)
14 GO:0009987 cellular process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007068 ethylene regimen (+)
2 MCE:1000010 submergence stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQAS27 plant height
3 CQE26 carbon content
4 CQE27 grain number
5 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007041 inflorescence emergence from flag leaf sheath (+)
3 PO:0007089 stem elongation (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0020142 stem internode (+)
3 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shan Chi; Mei Zhiling; Duan Jianli; Chen Haiying; Feng Huafeng; Cai Weiming; OsGA2ox5, a Gibberellin Metabolism Enzyme, Is Involved in Plant Growth, the Root Gravity Response and Salt Stress. PloS one 2014:9
PMID [24475234]


Qi Weiwei; Sun Fan; Wang Qianjie; Chen Mingluan; Huang Yunqing; Feng Yu-Qi; Luo Xiaojin; Yang Jinshui; Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene. Plant Physiology 2011:157
PMID [21753115]


Iwamoto M; Baba-Kasai A; Kiyota S; Hara N; Takano M; ACO1, a gene for aminocyclopropane-1-carboxylate oxidase: effects on internode elongation at the heading stage in rice. Plant, Cell & Environment 2010:
PMID [20040065]


Fukao Takeshi; Bailey-Serres Julia; Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proceedings of The National Academy of Sciences of The United States of America 2008:105
PMID [18936491]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India