Rice gene details
Searching for LOC_Os03g50480 [phosphoglucomutase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g50480.1 583 16 165 PF02878.8 PGM_PMM_I
2 LOC_Os03g50480.1 583 199 313 PF02879.8 PGM_PMM_II
3 LOC_Os03g50480.1 583 315 439 PF02880.8 PGM_PMM_III
4 LOC_Os03g50480.1 583 477 571 PF00408.12 PGM_PMM_IV
5 LOC_Os03g50480.2 506 2 88 PF02878.8 PGM_PMM_I
6 LOC_Os03g50480.2 506 122 236 PF02879.8 PGM_PMM_II
7 LOC_Os03g50480.2 506 238 362 PF02880.8 PGM_PMM_III
8 LOC_Os03g50480.2 506 400 494 PF00408.12 PGM_PMM_IV
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  1
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010044 response to aluminum ion  
2 GO:0009605 response to external stimulus (RGAP)
3 GO:0009628 response to abiotic stimulus (RGAP)
4 GO:0007275 multicellular organismal development (RGAP)
5 GO:0005975 carbohydrate metabolic process (RGAP)
6 GO:0019725 cellular homeostasis (RGAP)
7 GO:0009058 biosynthetic process (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0009056 catabolic process (RGAP)
10 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005886 plasma membrane (RGAP)
4 GO:0009536 plastid (RGAP)
5 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000222 aluminium chloride regimen (AlCl3) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 P61-PWY UDP-glucose conversion
2 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
3 PWY-621 sucrose degradation III
4 PWY-622 starch biosynthesis
5 PWY-842 starch degradation
6 SUCSYN-PWY sucrose biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQAS27 plant height
3 CQE26 carbon content
4 CQE27 grain number
5 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India