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Searching for LOC_Os03g50480
[phosphoglucomutase, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g50480.1 |
583 |
16 |
165 |
PF02878.8 |
PGM_PMM_I |
2 |
LOC_Os03g50480.1 |
583 |
199 |
313 |
PF02879.8 |
PGM_PMM_II |
3 |
LOC_Os03g50480.1 |
583 |
315 |
439 |
PF02880.8 |
PGM_PMM_III |
4 |
LOC_Os03g50480.1 |
583 |
477 |
571 |
PF00408.12 |
PGM_PMM_IV |
5 |
LOC_Os03g50480.2 |
506 |
2 |
88 |
PF02878.8 |
PGM_PMM_I |
6 |
LOC_Os03g50480.2 |
506 |
122 |
236 |
PF02879.8 |
PGM_PMM_II |
7 |
LOC_Os03g50480.2 |
506 |
238 |
362 |
PF02880.8 |
PGM_PMM_III |
8 |
LOC_Os03g50480.2 |
506 |
400 |
494 |
PF00408.12 |
PGM_PMM_IV |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
S. No. |
GO Id |
GO Description |
1 |
GO:0005515 |
protein binding |
(RGAP) |
2 |
GO:0003824 |
catalytic activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCE:1000222 |
aluminium chloride regimen (AlCl3) |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
P61-PWY |
UDP-glucose conversion |
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2 |
PWY-3801 |
sucrose degradation to ethanol and lactate (anaerobic) |
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3 |
PWY-621 |
sucrose degradation III |
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4 |
PWY-622 |
starch biosynthesis |
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5 |
PWY-842 |
starch degradation |
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6 |
SUCSYN-PWY |
sucrose biosynthesis |
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QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
CQE18 |
yield |
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2 |
CQAS27 |
plant height |
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3 |
CQE26 |
carbon content |
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4 |
CQE27 |
grain number |
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5 |
CQF5 |
soluble protein content |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009005 |
root |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Wang Zhan Qi; Xu Xiao Yan; Gong Qiao Qiao; Xie Chen; Fan Wei; Yang Jian Li; Lin Qi Shan; Zheng Shao Jian; Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants. Journal of proteomics 2014:98
PMID [24412201]
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