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Searching for LOC_Os03g52700 
[expressed protein ] |
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| Basic information [Interpro DB] |
Graphical representation of the protein domains |
| S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Interpro ID |
Domain Name |
| 1 |
LOC_Os03g52700.1 |
916 |
21 |
81 |
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RING/U-box |
| 2 |
LOC_Os03g52700.1 |
916 |
882 |
891 |
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seg |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
| N22 Flag-leaf FC |
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| N22InfloresenceFC |
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| N22 Root FC |
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| IR64 Flag-leaf FC |
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| IR64InfloresenceFC |
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| IR64 Root FC |
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Functional details
Molecular Function
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0003824 |
catalytic activity |
(RGAP) |
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Biological process
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0048589 |
developmental growth |
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| 2 |
GO:0009058 |
biosynthetic process |
(RGAP) |
| 3 |
GO:0006139 |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
(RGAP) |
| 4 |
GO:0006950 |
response to stress |
(RGAP) |
| 5 |
GO:0009628 |
response to abiotic stimulus |
(RGAP) |
| 6 |
GO:0006464 |
protein modification process |
(RGAP) |
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Cellular component
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Environment details
| S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
EO:0007080 |
jasmonic acid regimen |
(+) |
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Metabolic Pathway details
QTL details
| S. No. |
QTL Id |
QTL Associated Trait |
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| 1 |
CQE18 |
yield |
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| 2 |
CQAS27 |
plant height |
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| 3 |
CQE26 |
carbon content |
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| 4 |
CQE27 |
grain number |
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| 5 |
CQF5 |
soluble protein content |
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Plant developmental stage / tissue details
Plant development stage
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
PO:0008037 |
seedling |
(+) |
Others
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| Not found |
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Trait details
| S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
MCT:1000664 |
Root curling |
(+) |
| 2 |
MCT:1000665 |
root growth rate |
(+) |
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Physical interaction details
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Interaction type: protein-protein
Interaction type: protein-DNA
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| Related publications [Sorted by year] |
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| 1 |
Lourenço Tiago F; Serra Tânia S; Cordeiro André M; Swanson Sarah J; Gilroy Simon; Saibo Nelson J M; Oliveira M Margarida; The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant physiology 2015:169
PMID [26381316]
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