Rice gene details
Searching for LOC_Os03g52700 [expressed protein ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os03g52700.1 916 21 81 RING/U-box
2 LOC_Os03g52700.1 916 882 891 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0048589 developmental growth  
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
4 GO:0006950 response to stress (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007080 jasmonic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQAS27 plant height
3 CQE26 carbon content
4 CQE27 grain number
5 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000664 Root curling (+)
2 MCT:1000665 root growth rate (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Lourenço Tiago F; Serra Tânia S; Cordeiro André M; Swanson Sarah J; Gilroy Simon; Saibo Nelson J M; Oliveira M Margarida; The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant physiology 2015:169
PMID [26381316]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India