Rice gene details
Searching for LOC_Os03g53340 [HSF-type DNA-binding domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g53340.1 377 52 231 PF00447.9 HSF_DNA-bind
2 LOC_Os03g53340.2 377 52 231 PF00447.9 HSF_DNA-bind
3 LOC_Os03g53340.3 377 52 231 PF00447.9 HSF_DNA-bind
4 LOC_Os03g53340.4 289 21 143 PF00447.9 HSF_DNA-bind
5 LOC_Os03g53340.6 377 52 231 PF00447.9 HSF_DNA-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  2
N22 Root FC
  2
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  5
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003677 DNA binding (RGAP)
2 GO:0005515 protein binding (RGAP)
3 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006979 response to oxidative stress  
2 GO:0009408 response to heat  
3 GO:0009409 response to cold  
4 GO:0009414 response to water deprivation  
5 GO:0009651 response to salt stress  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006950 response to stress (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
10 GO:0009058 biosynthetic process (RGAP)
11 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
12 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005623 cell (RGAP)
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007332 cold air temperature regimen (+)
6 EO:0007338 cold water temperature regimen (+)
7 EO:0007368 warm/hot water temperature regimen (+)
8 EO:0007415 hydrogen peroxide (+)
9 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQE26 carbon content
3 CQE27 grain number
4 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0005052 plant callus (+)
3 PO:0006340 adult leaf (-)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009009 plant embryo (+)
8 PO:0009010 seed (-)
9 PO:0009046 flower (+)
10 PO:0009047 stem (+)
11 PO:0009049 inflorescence (+)
12 PO:0020104 leaf sheath (+)
13 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Rerksiri Wirat; Zhang Xianwen; Xiong Hairong; Chen Xinbo; Expression and promoter analysis of six heat stress-inducible genes in rice. The Scientific World Journal 2013:2013
PMID [24459431]


Mittal Dheeraj; Madhyastha Dinesh A; Grover Anil; Gene expression analysis in response to low and high temperature and oxidative stresses in rice: Combination of stresses evokes different transcriptional changes as against stresses applied individually. Plant Science 2012:197
PMID [23116677]


Mittal Dheeraj; Chakrabarti Sveta; Sarkar Anshuk; Singh Amanjot; Grover Anil; Heat shock factor gene family in rice: genomic organization and transcript expression profiling in response to high temperature, low temperature and oxidative stresses. Plant Physiology and Biochemistry 2009:47
PMID [19539489]


Wang Chuang; Zhang Qian; Shou Hui-xia; Identification and expression analysis of OsHsfs in rice. Journal of Zhejiang University. Science. B 2009:10
PMID [19353748]


Yokotani Naoki; Ichikawa Takanari; Kondou Youichi; Matsui Minami; Hirochika Hirohiko; Iwabuchi Masaki; Oda Kenji; Expression of rice heat stress transcription factor OsHsfA2e enhances tolerance to environmental stresses in transgenic Arabidopsis. Planta 2008:227
PMID [18064488]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India