Rice gene details
Searching for LOC_Os03g53500 [helicase conserved C-terminal domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g53500.1 580 259 345 PF00271.23 Helicase_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  3
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003678 DNA helicase activity  
2 GO:0003724 RNA helicase activity  
3 GO:0016887 ATPase activity  
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0010043 response to zinc ion  
6 GO:0035864 response to potassium ion  
7 GO:0042538 hyperosmotic salinity response  
8 GO:0046686 response to cadmium ion  
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (-)
5 EO:0007198 water environment (+)
6 EO:0007223 cadmium chloride (+)
7 MCE:1000016 polyethylene glycol (PEG) treatment (+)
8 MCE:1000078 potassium chloride regimen (KCl) (+)
9 MCE:1000158 zinc chloride regimen (ZnCl2) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQE26 carbon content
3 CQE27 grain number
4 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000521 mature plant stage (+)
4 PO:0001053 3 leaf fully expanded (+)
5 PO:0007057 0 germination (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009010 seed (+)
5 PO:0009047 stem (+)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000014 electrolyte leakage (+)
3 MCT:1000037 malondialdehyde (MDA) content (+)
4 MCT:1000038 catalase (CAT) activity (+)
5 MCT:1000044 ascorbate peroxidase activity (APX) (+)
6 MCT:1000101 seed germination (+)
7 MCT:1000208 leaf whitening (+)
8 MCT:1000410 straw weight (+)
9 MCT:1000470 zeatin content (+)
10 MCT:1000483 glutathione reductase (GR) activity (+)
11 MCT:1000504 seedling fresh weight (+)
12 MCT:1000532 intercellular carbon dioxide concentration (+)
13 MCT:1000654 salt tolerance index (+)
14 TO:0000028 unfilled grain number (+)
15 TO:0000078 root dry weight (+)
16 TO:0000136 relative water content (+)
17 TO:0000152 panicle number (+)
18 TO:0000207 plant height (+)
19 TO:0000227 root length (+)
20 TO:0000272 plant survivability (+)
21 TO:0000345 seed viability (+)
22 TO:0000346 tiller number (+)
23 TO:0000447 filled grain number (+)
24 TO:0000495 chlorophyll content (+)
25 TO:0000522 stomatal conductance (+)
26 TO:0000540 leaf area (+)
27 TO:0000591 100-dehulled grain weight (+)
28 TO:0000598 protein content (+)
29 TO:0000605 hydrogen peroxide content (+)
30 TO:0000608 sodium content (+)
31 TO:0000609 potassium content (+)
32 TO:0001015 photosynthetic rate (+)
33 TO:0001024 phosphorus content (+)
34 TO:0002616 flowering time (+)
35 TO:0002675 gibberellic acid content (+)
36 TO:0006002 proline content (+)
37 TO:0006060 leaf chlorosis (+)
38 TO:0020093 nitrogen content (+)
39 TO:0020106 Indole-3-acetic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sahoo Ranjan Kumar; Tuteja Narendra; OsSUV3 functions in cadmium and zinc stress tolerance in rice (Oryza sativa L. cv IR64). Plant signaling & behavior 2014:9
PMID [24398379]


Sahoo Ranjan Kumar; Ansari Mohammad Wahid; Tuteja Renu; Tuteja Narendra; OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity. Rice (New York, N.Y.) 2014:7
PMID [25184028]


Tuteja Narendra; Sahoo Ranjan Kumar; Garg Bharti; Tuteja Renu; OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64). The Plant journal : for cell and molecular biology 2013:76
PMID [23808500]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India