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Searching for LOC_Os03g53500
[helicase conserved C-terminal domain containing protein, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g53500.1 |
580 |
259 |
345 |
PF00271.23 |
Helicase_C |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007105 |
abscisic acid regimen |
(+) |
3 |
EO:0007173 |
warm/hot temperature regimen |
(+) |
4 |
EO:0007174 |
cold temperature regimen |
(-) |
5 |
EO:0007198 |
water environment |
(+) |
6 |
EO:0007223 |
cadmium chloride |
(+) |
7 |
MCE:1000016 |
polyethylene glycol (PEG) treatment |
(+) |
8 |
MCE:1000078 |
potassium chloride regimen (KCl) |
(+) |
9 |
MCE:1000158 |
zinc chloride regimen (ZnCl2) |
(+) |
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Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
CQE18 |
yield |
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2 |
CQE26 |
carbon content |
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3 |
CQE27 |
grain number |
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4 |
CQF5 |
soluble protein content |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000107 |
post-germination stage |
(+) |
2 |
MCP:1000518 |
seedling development stage |
(+) |
3 |
MCP:1000521 |
mature plant stage |
(+) |
4 |
PO:0001053 |
3 leaf fully expanded |
(+) |
5 |
PO:0007057 |
0 germination |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Sahoo Ranjan Kumar; Tuteja Narendra; OsSUV3 functions in cadmium and zinc stress tolerance in rice (Oryza sativa L. cv IR64). Plant signaling & behavior 2014:9
PMID [24398379]
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2 |
Sahoo Ranjan Kumar; Ansari Mohammad Wahid; Tuteja Renu; Tuteja Narendra; OsSUV3 transgenic rice maintains higher endogenous levels of plant hormones that mitigates adverse effects of salinity and sustains crop productivity. Rice (New York, N.Y.) 2014:7
PMID [25184028]
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3 |
Tuteja Narendra; Sahoo Ranjan Kumar; Garg Bharti; Tuteja Renu; OsSUV3 dual helicase functions in salinity stress tolerance by maintaining photosynthesis and antioxidant machinery in rice (Oryza sativa L. cv. IR64). The Plant journal : for cell and molecular biology 2013:76
PMID [23808500]
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