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Searching for LOC_Os03g53750 
[nuclear prelamin A recognition factor, putative, expressed ] |
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| Basic information [Pfam DB] |
Graphical representation of the protein domains |
| S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
| 1 |
LOC_Os03g53750.1 |
477 |
97 |
404 |
PF02906.6 |
Fe_hyd_lg_C |
| 2 |
LOC_Os03g53750.1 |
477 |
434 |
466 |
PF02256.9 |
Fe_hyd_SSU |
| 3 |
LOC_Os03g53750.2 |
395 |
15 |
322 |
PF02906.6 |
Fe_hyd_lg_C |
| 4 |
LOC_Os03g53750.2 |
395 |
352 |
384 |
PF02256.9 |
Fe_hyd_SSU |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
| N22 Flag-leaf FC |
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| N22InfloresenceFC |
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| N22 Root FC |
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| IR64 Flag-leaf FC |
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| IR64InfloresenceFC |
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| IR64 Root FC |
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Functional details
Molecular Function
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0003824 |
catalytic activity |
(RGAP) |
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Biological process
Cellular component
| S. No. |
GO Id |
GO Description |
| 1 |
GO:0005829 |
cytosol |
(RGAP) |
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Environment details
| S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
EO:0007242 |
iron nutrient regimen |
(+) |
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Metabolic Pathway details
| S. No. |
Pathway Id |
Pathway Description |
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| 1 |
NONOXIPENT-PWY |
pentose phosphate pathway (non-oxidative branch) |
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QTL details
| S. No. |
QTL Id |
QTL Associated Trait |
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| 1 |
CQE18 |
yield |
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| 2 |
CQE26 |
carbon content |
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| 3 |
CQE27 |
grain number |
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| 4 |
CQF5 |
soluble protein content |
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Plant developmental stage / tissue details
Plant development stage
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
MCP:1000518 |
seedling development stage |
(+) |
Plant tissue/organ
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| 1 |
PO:0009005 |
root |
(+) |
| 2 |
PO:0025034 |
leaf |
(+) |
Others
| S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
| Not found |
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Trait details
Physical interaction details
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Interaction type: protein-protein
Interaction type: protein-DNA
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| Related publications [Sorted by year] |
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| 1 |
Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]
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