Rice gene details
Searching for LOC_Os03g55100 [cyclic nucleotide-gated ion channel 2, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g55100.1 727 173 450 PF00520.23 Ion_trans
2 LOC_Os03g55100.1 727 551 649 PF00027.21 cNMP_binding
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  4
N22 Root FC
  -9
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005215 transporter activity (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009617 response to bacterium  
3 GO:0009723 response to ethylene stimulus  
4 GO:0009733 response to auxin stimulus  
5 GO:0009735 response to cytokinin stimulus  
6 GO:0009737 response to abscisic acid stimulus  
7 GO:0006810 transport (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0007165 signal transduction (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0008219 cell death (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007068 ethylene regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 EO:0007198 water environment (+)
6 EO:0007234 Pseudomonas fuscovaginae (+)
7 EO:0007257 Xanthomonas oryzae pv. oryzae (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQE26 carbon content
3 CQE27 grain number
4 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]


2  Schmidt Romy; Schippers Jos H M; Welker Annelie; Mieulet Delphine; Guiderdoni Emmanuel; Mueller-Roeber Bernd; Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. AOB Plants 2012:2012
PMID [22616023]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India