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Searching for LOC_Os03g55100
[cyclic nucleotide-gated ion channel 2, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g55100.1 |
727 |
173 |
450 |
PF00520.23 |
Ion_trans |
2 |
LOC_Os03g55100.1 |
727 |
551 |
649 |
PF00027.21 |
cNMP_binding |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
S. No. |
GO Id |
GO Description |
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Environment details
Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
CQE18 |
yield |
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2 |
CQE26 |
carbon content |
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3 |
CQE27 |
grain number |
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4 |
CQF5 |
soluble protein content |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0009005 |
root |
(+) |
2 |
PO:0025034 |
leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Nawaz Zarqa; Kakar Kaleem Ullah; Saand Mumtaz A; Shu Qing-Yao; Cyclic nucleotide-gated ion channel gene family in rice, identification, characterization and experimental analysis of expression response to plant hormones, biotic and abiotic stresses. BMC genomics 2014:15
PMID [25280591]
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2 |
Schmidt Romy; Schippers Jos H M; Welker Annelie; Mieulet Delphine; Guiderdoni Emmanuel; Mueller-Roeber Bernd; Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica. AOB Plants 2012:2012
PMID [22616023]
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