|
Searching for LOC_Os03g55850
[cold acclimation protein WCOR413, putative, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g55850.1 |
211 |
9 |
198 |
PF05562.3 |
WCOR413 |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
Biological process
Cellular component
|
Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007332 |
cold air temperature regimen |
(+) |
|
Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
|
1 |
CQE18 |
yield |
|
2 |
CQE26 |
carbon content |
|
3 |
CQE27 |
grain number |
|
4 |
CQF5 |
soluble protein content |
|
|
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0008037 |
seedling |
(+) |
2 |
PO:0009025 |
vascular leaf |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Gothandam Kodiveri Muthukalianan; Nalini Easwaran; Karthikeyan Sivashanmugam; Shin Jeong Sheop; OsPRP3, a flower specific proline-rich protein of rice, determines extracellular matrix structure of floral organs and its overexpression confers cold-tolerance. Plant Molecular Biology 2010:72
PMID [19830390]
 |
|
|
2 |
Gao Shumei; Zhang Haiwen; Tian Yun; Li Fang; Zhang Zhijin; Lu Xiangyang; Chen Xiaoliang; Huang Rongfeng; Expression of TERF1 in rice regulates expression of stress-responsive genes and enhances tolerance to drought and high-salinity. Plant cell reports 2008:27
PMID [18777179]
 |
|
|
|