Rice gene details
Searching for LOC_Os03g57450 [CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g57450.1 600 133 391 PF00069.17 Pkinase
2 LOC_Os03g57450.1 600 438 466 PF00036.24 efhand
3 LOC_Os03g57450.1 600 474 502 PF00036.24 efhand
4 LOC_Os03g57450.1 600 510 538 PF00036.24 efhand
5 LOC_Os03g57450.1 600 544 572 PF00036.24 efhand
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -10
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  10
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004672 protein kinase activity  
2 GO:0004674 protein serine/threonine kinase activity  
3 GO:0016301 kinase activity (RGAP)
4 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006468 protein phosphorylation  
2 GO:0009725 response to hormone stimulus  
3 GO:0009735 response to cytokinin stimulus  
4 GO:0046777 protein autophosphorylation  
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0005777 peroxisome (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007290 kinetin regimen (+)
3 EO:0007332 cold air temperature regimen (+)
4 MCE:1000321 Magnaporthe grisea isolate 12-DG2X-32-1 (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQE26 carbon content
3 CQE27 grain number
4 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0001053 3 leaf fully expanded (+)
3 PO:0007041 inflorescence emergence from flag leaf sheath (+)
4 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005052 plant callus (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009047 stem (+)
5 PO:0009049 inflorescence (-)
6 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Fu Liwen; Yu Xiangchun; An Chengcai; Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea. Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2013:73
PMID [24141028]


2  Ye Shuifeng; Wang Lei; Xie Weibo; Wan Bingliang; Li Xianghua; Lin Yongjun; Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica). Plant Molecular Biology 2009:70
PMID [19263224]


3  Wan Bingliang; Lin Yongjun; Mou Tongmin; Expression of rice Ca(2+)-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Letters 2007:581
PMID [17336300]


4  Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India