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Searching for LOC_Os03g57450
[CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g57450.1 |
600 |
133 |
391 |
PF00069.17 |
Pkinase |
2 |
LOC_Os03g57450.1 |
600 |
438 |
466 |
PF00036.24 |
efhand |
3 |
LOC_Os03g57450.1 |
600 |
474 |
502 |
PF00036.24 |
efhand |
4 |
LOC_Os03g57450.1 |
600 |
510 |
538 |
PF00036.24 |
efhand |
5 |
LOC_Os03g57450.1 |
600 |
544 |
572 |
PF00036.24 |
efhand |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007198 |
water environment |
(+) |
2 |
EO:0007290 |
kinetin regimen |
(+) |
3 |
EO:0007332 |
cold air temperature regimen |
(+) |
4 |
MCE:1000321 |
Magnaporthe grisea isolate 12-DG2X-32-1 |
(+) |
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Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
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1 |
CQE18 |
yield |
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2 |
CQE26 |
carbon content |
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3 |
CQE27 |
grain number |
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4 |
CQF5 |
soluble protein content |
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0001053 |
3 leaf fully expanded |
(+) |
3 |
PO:0007041 |
inflorescence emergence from flag leaf sheath |
(+) |
4 |
PO:0007106 |
LP.03 three leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Fu Liwen; Yu Xiangchun; An Chengcai; Overexpression of constitutively active OsCPK10 increases Arabidopsis resistance against Pseudomonas syringae pv. tomato and rice resistance against Magnaporthe grisea. Plant physiology and biochemistry : PPB / Société française de physiologie végétale 2013:73
PMID [24141028]
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2 |
Ye Shuifeng; Wang Lei; Xie Weibo; Wan Bingliang; Li Xianghua; Lin Yongjun; Expression profile of calcium-dependent protein kinase (CDPKs) genes during the whole lifespan and under phytohormone treatment conditions in rice (Oryza sativa L. ssp. indica). Plant Molecular Biology 2009:70
PMID [19263224]
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3 |
Wan Bingliang; Lin Yongjun; Mou Tongmin; Expression of rice Ca(2+)-dependent protein kinases (CDPKs) genes under different environmental stresses. FEBS Letters 2007:581
PMID [17336300]
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4 |
Tanaka Naoki; Matsuoka Makoto; Kitano Hidemi; Asano Takayuki; Kaku Hisatoshi; Komatsu Setsuko; gid1, a gibberellin-insensitive dwarf mutant, shows altered regulation of probenazole-inducible protein (PBZ1) in response to cold stress and pathogen attack. Plant, Cell & Environment 2006:29
PMID [17080612]
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