|
Searching for LOC_Os03g57990
[LTPL74 - Protease inhibitor/seed storage/LTP family protein precursor, expressed ] |
|
|
Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os03g57990.1 |
190 |
47 |
124 |
PF00234.14 |
Tryp_alpha_amyl |
|
The basic information is from RGAP and Pfam/InterPro databases |
|
|
Gene model (download) 
IR64 N22
|
Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
|
N22InfloresenceFC |
|
N22 Root FC |
|
IR64 Flag-leaf FC |
|
IR64InfloresenceFC |
|
IR64 Root FC |
|
|
|
Functional details
Molecular Function
Biological process
Cellular component
|
Environment details
Metabolic Pathway details
QTL details
S. No. |
QTL Id |
QTL Associated Trait |
|
1 |
CQE18 |
yield |
|
2 |
CQE26 |
carbon content |
|
3 |
CQE27 |
grain number |
|
4 |
CQF5 |
soluble protein content |
|
|
|
Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000173 |
inflorescence 5-10cm stage |
(+) |
2 |
MCP:1000176 |
inflorescence 22-30cm stage |
(+) |
3 |
MCP:1000518 |
seedling development stage |
(+) |
4 |
MCP:1000521 |
mature plant stage |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
|
Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
|
|
Related publications [Sorted by year] |
|
1 |
Ma Tengfei; Ma Haoli; Zhao Heming; Qi Huandong; Zhao Jie; Identification, characterization, and transcription analysis of xylogen-like arabinogalactan proteins in rice (Oryza sativa L.). BMC plant biology 2014:14
PMID [25407280]
 |
|
|
|