Rice gene details
Searching for LOC_Os03g58400 [C-5 cytosine-specific DNA methylase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g58400.1 377 79 135 PF00145.9 DNA_methylase
2 LOC_Os03g58400.1 377 283 370 PF00145.9 DNA_methylase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -2
N22 Root FC
  -3
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0009651 response to salt stress  
3 GO:0040029 regulation of gene expression, epigenetic (RGAP)
4 GO:0006259 DNA metabolic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0009908 flower development (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0008152 metabolic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0000003 reproduction (RGAP)
11 GO:0009791 post-embryonic development (RGAP)
12 GO:0009790 embryo development (RGAP)
13 GO:0007049 cell cycle (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE18 yield
2 CQE26 carbon content
3 CQE27 grain number
4 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000520 young inflorescence stage (+)
3 PO:0007014 booting (+)
4 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009006 shoot system (+)
5 PO:0009047 stem (+)
6 PO:0009049 inflorescence (+)
7 PO:0020039 leaf lamina (+)
8 PO:0020104 leaf sheath (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India