Rice gene details
Searching for LOC_Os03g59610 [oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g59610.1 282 19 187 PF00106.17 adh_short
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0010301 xanthoxin dehydrogenase activity  
2 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0009628 response to abiotic stimulus (RGAP)
5 GO:0006629 lipid metabolic process (RGAP)
6 GO:0019748 secondary metabolic process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0007165 signal transduction (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)
2 MCE:1000069 dessication/dehydration stress (+)
3 MCE:1000170 paclobutrazol (PBZ) (+)
4 MCE:1000241 D-glucose (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 ENTBACSYN-PWY enterobactin biosynthesis
2 FERMENTATION-PWY mixed acid fermentation
3 ILEUSYN-PWY isoleucine biosynthesis from threonine
4 P127-PWY ethanol fermentation to acetate
5 PWY-3801 sucrose degradation to ethanol and lactate (anaerobic)
6 PWY-5079 phenylalanine degradation III
7 PWY-695 abscisic acid biosynthesis
8 PWY66-21 oxidative ethanol degradation I

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE26 carbon content
2 CQE27 grain number
3 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (+)
2 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009006 shoot system (+)
3 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000039 water loss (+)
2 MCT:1000082 green cotyledon percentage (+)
3 MCT:1000569 radicle emergence (+)
4 TO:0000019 seedling height (+)
5 TO:0000478 abscisic acid concentration (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Endo Akira; Nelson Ken M; Thoms Ken; Abrams Suzanne R; Nambara Eiji; Sato Yutaka; Functional characterization of xanthoxin dehydrogenase in rice. Journal of plant physiology 2014:171
PMID [25014258]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India