Rice gene details
Searching for LOC_Os03g59640 [magnesium-chelatase subunit chlD, chloroplast precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g59640.1 755 81 291 PF01078.13 Mg_chelatase
2 LOC_Os03g59640.1 755 554 743 PF00092.20 VWA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  -1
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
3 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000351 5-aminolevulinic acid (+)
2 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CHLOROPHYLL-SYN chlorophyllide a biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE26 carbon content
2 CQE27 grain number
3 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India