Rice gene details
Searching for LOC_Os03g60509 [expressed protein ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g60509.2 234 14 214 PF02431.7 Chalcone
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  9
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009416 response to light stimulus  
2 GO:0009744 response to sucrose stimulus  
3 GO:0009749 response to glucose stimulus  
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0009987 cellular process (RGAP)
7 GO:0019748 secondary metabolic process (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)
2 GO:0005783 endoplasmic reticulum (RGAP)
3 GO:0016020 membrane (RGAP)
4 GO:0005773 vacuole (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007196 light regimen (+)
2 MCE:1000037 sucrose (+)
3 MCE:1000241 D-glucose (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5059 pinobanksin biosynthesis
2 PWY1F-FLAVSYN flavonoid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQE26 carbon content
2 CQE27 grain number
3 CQF5 soluble protein content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000288 7 days post-anthesis stage (+)
3 MCP:1000489 3 days post-anthesis stage (+)
4 MCP:1000518 seedling development stage (+)
5 MCP:1000520 young inflorescence stage (-)
6 MCP:1000521 mature plant stage (+)
7 MCP:1000533 early tillering stage (+)
8 MCP:1000534 late tillering stage (+)
9 PO:0007013 BO.03 late boot stage (-)
10 PO:0007014 booting (+)
11 PO:0007041 inflorescence emergence from flag leaf sheath (+)
12 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000160 middle part of root (+)
2 PO:0000003 whole plant (+)
3 PO:0000025 root tip (+)
4 PO:0005421 parenchyma (+)
5 PO:0005679 epidermis (+)
6 PO:0006000 Poaceae hull (+)
7 PO:0008037 seedling (+)
8 PO:0009001 fruit (+)
9 PO:0009005 root (-)
10 PO:0009037 lemma (+)
11 PO:0009038 palea (+)
12 PO:0009049 inflorescence (+)
13 PO:0009051 spikelet (+)
14 PO:0009089 endosperm (+)
15 PO:0020103 flag leaf (+)
16 PO:0020104 leaf sheath (+)
17 PO:0020142 stem internode (+)
18 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000429 golden pigmentation (+)
2 MCT:1000508 golden pigmentation in hull (+)
3 MCT:1000509 golden pigmentation in stem internode (+)
4 TO:0000071 anthocyanin content (+)
5 TO:0000290 flavonoid content (+)
6 TO:0000731 lignin content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chen Xiaoqiong; Itani Tomio; Wu Xianjun; Chikawa Yuuki; Irifune Kohei; Physiological factors affecting transcription of genes involved in the flavonoid biosynthetic pathway in different rice varieties. Plant signaling & behavior 2014:8
PMID [24389954]


Hong Lilan; Qian Qian; Tang Ding; Wang Kejian; Li Ming; Cheng Zhukuan; A mutation in the rice chalcone isomerase gene causes the golden hull and internode 1 phenotype. Planta 2012:
PMID [22286805]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India