Rice gene details
Searching for LOC_Os03g63970 [gibberellin 20 oxidase 1, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os03g63970.1 373 210 309 PF03171.12 2OG-FeII_Oxy
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -1
N22 Root FC
  6
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  4

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0046688 response to copper ion  
3 GO:0016043 cellular component organization (RGAP)
4 GO:0009653 anatomical structure morphogenesis (RGAP)
5 GO:0016049 cell growth (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0009058 biosynthetic process (RGAP)
9 GO:0009987 cellular process (RGAP)
10 GO:0006629 lipid metabolic process (RGAP)
11 GO:0000003 reproduction (RGAP)
12 GO:0009628 response to abiotic stimulus (RGAP)
13 GO:0009791 post-embryonic development (RGAP)
14 GO:0009908 flower development (RGAP)
15 GO:0007165 signal transduction (RGAP)
16 GO:0007275 multicellular organismal development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007198 water environment (+)
2 EO:0007261 copper nutrient regimen (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5046 branched-chain α-keto acid dehydrogenase complex
2 TCA TCA cycle

QTL details
Not found

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000204 5 days post-anthesis stage (+)
2 MCP:1000330 pre-anthesis stage (+)
3 MCP:1000376 15 days post-anthesis stage (+)
4 MCP:1000454 10 days post-anthesis stage (+)
5 MCP:1000473 20 days post-anthesis stage (+)
6 MCP:1000477 25 days post-anthesis stage (+)
7 MCP:1000505 30 days post-anthesis stage (+)
8 MCP:1000518 seedling development stage (+)
9 PO:0007022 imbibition (+)
10 PO:0007616 4 anthesis (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009010 seed (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liu Yang; Fang Jun; Xu Fan; Chu Jinfang; Yan Cunyu; Schl├Ąppi Michael R; Wang Youping; Chu Chengcai; Expression patterns of ABA and GA metabolism genes and hormone levels during rice seed development and imbibition: a comparison of dormant and non-dormant rice cultivars. Journal of genetics and genomics = Yi chuan xue bao 2014:41
PMID [24976122]


Ye Nenghui; Li Haoxuan; Zhu Guohui; Liu Yinggao; Liu Rui; Xu Weifeng; Jing Yu; Peng Xinxiang; Zhang Jianhua; Copper Suppresses Abscisic Acid Catabolism and Catalase Activity and Inhibits Seed Germination of Rice. Plant & cell physiology 2014:
PMID [25273891]


Ho Shin-Lon; Huang Li-Fen; Lu Chung-An; He Siou-Luan; Wang Chun-Chin; Yu Sheng-Ping; Chen Jychian; Yu Su-May; Sugar starvation- and GA-inducible calcium-dependent protein kinase 1 feedback regulates GA biosynthesis and activates a 14-3-3 protein to confer drought tolerance in rice seedlings. Plant molecular biology 2013:
PMID [23329372]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India