Rice gene details
Searching for LOC_Os04g01740 [heat shock protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g01740.1 704 35 189 PF02518.18 HATPase_c
2 LOC_Os04g01740.1 704 192 703 PF00183.10 HSP90
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  14
N22InfloresenceFC
  23
N22 Root FC
  15
IR64 Flag-leaf FC
  10
IR64InfloresenceFC
  5
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009414 response to water deprivation  
4 GO:0009651 response to salt stress  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0006950 response to stress (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
8 GO:0009628 response to abiotic stimulus (RGAP)
9 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005618 cell wall (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (+)
4 EO:0007174 cold temperature regimen (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCI006 phosphorus sensitivity
2 CQY2 germination speed
3 AQCK008 days to heading
4 AQDO005 invitro regeneration ability
5 AQDO009 invitro regeneration ability
6 AQDZ001 lodging incidence
7 CQE28 days to heading
8 CQN14 soluble protein content
9 AQGG003 callus induction
10 CQX2 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007014 booting (+)
3 PO:0007022 imbibition (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009009 plant embryo (+)
4 PO:0009047 stem (+)
5 PO:0009049 inflorescence (+)
6 PO:0020104 leaf sheath (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Rerksiri Wirat; Zhang Xianwen; Xiong Hairong; Chen Xinbo; Expression and promoter analysis of six heat stress-inducible genes in rice. The Scientific World Journal 2013:2013
PMID [24459431]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India