Rice gene details
Searching for LOC_Os04g03980 [flavin monooxygenase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g03980.1 420 164 199 PF00743.11 FMO-like
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -15
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005488 binding (RGAP)
3 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000103 fluridone (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 GLYCOLYSIS glycolysis I
2 PWY-581 IAA biosynthesis I

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCI006 phosphorus sensitivity
2 CQY2 germination speed
3 AQCK008 days to heading
4 AQDO005 invitro regeneration ability
5 AQDO009 invitro regeneration ability
6 AQDZ001 lodging incidence
7 CQE28 days to heading
8 CQN14 soluble protein content
9 AQGG003 callus induction
10 CQX2 days to heading
11 AQDY063 panicle length
12 AQDU008 cold tolerance
13 CQAA8 cold tolerance
14 AQCQ006 panicle number
15 AQCQ027 panicle number
16 AQGI003 root dry weight
17 AQGI027 root dry weight
18 AQGI043 root dry weight
19 AQGI112 biomass yield
20 AQGI167 biomass yield
21 AQGI201 total biomass yield
22 AQAL040 deep root dry weight
23 AQAL063 root thickness
24 AQGC025 penetrated root thickness
25 AQGC031 penetrated root thickness
26 CQAS40 plant height
27 CQAS41 days to heading
28 CQAS43 panicle length
29 CQAS45 spikelet number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007098 LP.02 two leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India