Rice gene details
Searching for LOC_Os04g16820 [DNA-directed RNA polymerase subunit beta, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g16820.1 1068 6 368 PF04563.7 RNA_pol_Rpb2_1
2 LOC_Os04g16820.1 1068 119 295 PF04561.6 RNA_pol_Rpb2_2
3 LOC_Os04g16820.1 1068 372 441 PF04565.8 RNA_pol_Rpb2_3
4 LOC_Os04g16820.1 1068 578 976 PF00562.20 RNA_pol_Rpb2_6
5 LOC_Os04g16820.1 1068 978 1055 PF04560.12 RNA_pol_Rpb2_7
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
  4
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
2 GO:0009058 biosynthetic process (RGAP)
Cellular component
Not found
1 GO:0005622 intracellular (RGAP)
2 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007332 cold air temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK008 days to heading
2 AQDO005 invitro regeneration ability
3 AQDO009 invitro regeneration ability
4 AQDZ001 lodging incidence
5 CQE28 days to heading
6 CQN14 soluble protein content
7 AQGG003 callus induction
8 CQX2 days to heading
9 CQAS40 plant height
10 CQAS41 days to heading
11 CQAS43 panicle length
12 CQAS45 spikelet number
13 AQED007 days to maturity
14 CQT1 brown planthopper resistance
15 AQAL017 deep root dry weight
16 CQE29 space
17 CQE30 space to culm ratio
18 AQEC002 white-backed planthopper resistance
19 CQI10 sodium to potassium ratio
20 CQI11 sodium concentration
21 CQI4 potassium uptake
22 AQFF065 panicle number
23 AQFE053 panicle length
24 AQFE095 plant height
25 AQFE112 awn length
26 AQE052 100-seed weight
27 AQE053 100-seed weight
28 AQEX024 root dry weight
29 AQEX035 root to shoot ratio
30 AQGI013 root dry weight
31 AQGI262 total biomass yield
32 AQAQ007 blast disease resistance
33 AQAQ015 blast disease resistance
34 AQAQ023 blast disease resistance
35 AQBT011 bacterial blight disease resistance
36 AQBT012 bacterial blight disease resistance
37 AQBT013 bacterial blight disease resistance
38 AQCU203 plant height
39 AQFW230 panicle length
40 CQK4 panicle number
41 CQK5 panicle number
42 CQS6 seminal root length
43 AQBE059 tiller number
44 AQDV004 biomass yield
45 AQDV011 days to heading
46 AQDV019 harvest index
47 AQDV039 panicle exsertion
48 AQEA056 plant height
49 AQEA057 plant height
50 AQEA058 plant height
51 AQEA059 plant height
52 AQEA060 plant height
53 AQEA061 plant height
54 AQEA062 plant height
55 AQEA063 plant height
56 AQEA064 plant height
57 AQEA065 plant height
58 AQEA066 plant height
59 AQEA220 days to heading
60 AQEA221 days to heading
61 AQEA222 days to heading
62 AQEA223 days to heading
63 AQEA224 days to heading
64 AQEA225 days to heading
65 AQEA226 days to heading
66 CQAI33 root number
67 CQJ5 panicle number
68 CQV20 plant height
69 AQCN008 days to heading
70 AQCN026 rice yellow mottle virus resistance
71 AQDQ041 panicle length
72 CQAO19 seed weight
73 CQAW15 tiller number
74 AQEO010 seed length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000316 third leaf from base (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Song Jian; Wei Xiangjin; Shao Gaoneng; Sheng Zhonghua; Chen Daibo; Liu Congli; Jiao Guiai; Xie Lihong; Tang Shaoqing; Hu Peisong; The rice nuclear gene WLP1 encoding a chloroplast ribosome L13 protein is needed for chloroplast development in rice grown under low temperature conditions. Plant molecular biology 2014:84
PMID [24132771]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India