Rice gene details Home Browse Search Contact Us Feedback Links Searching for LOC_Os04g17660 [rhodanese-like domain containing protein, putative, expressed ] Basic information [Pfam DB] Graphical representation of the protein domains S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name 1 LOC_Os04g17660.1 154 53 140 PF00581.12 Rhodanese 2 LOC_Os04g17660.2 154 53 140 PF00581.12 Rhodanese 3 LOC_Os04g17660.3 129 53 119 PF00581.12 Rhodanese   The basic information is from RGAP and Pfam/InterPro databases Gene model (download) IR64 N22 Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change] N22 Flag-leaf FC   2 N22InfloresenceFC   -1 N22 Root FC   -16 IR64 Flag-leaf FC   18 IR64InfloresenceFC   1 IR64 Root FC   -4 Functional details Molecular Function Not found 1 GO:0016740 transferase activity (RGAP) Biological process Not found 1 GO:0008152 metabolic process (RGAP) 2 GO:0008150 biological_process (RGAP) Cellular component Not found 1 GO:0005737 cytoplasm (RGAP) Environment details S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity 1 EO:0007048 sodium chloride regimen (+) 2 EO:0007332 cold air temperature regimen (+) 3 EO:0007404 drought environment (+) 4 MCE:1000069 dessication/dehydration stress (+) Metabolic Pathway details S. No. Pathway Id Pathway Description 1 DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I 2 P121-PWY salvage pathways of purine nucleosides 3 PWY-841 purine nucleotides de novo biosynthesis II QTL details S. No. QTL Id QTL Associated Trait 1 AQCK008 days to heading 2 AQDO005 invitro regeneration ability 3 AQDO009 invitro regeneration ability 4 AQDZ001 lodging incidence 5 CQE28 days to heading 6 CQN14 soluble protein content 7 AQGG003 callus induction 8 CQX2 days to heading 9 CQAS40 plant height 10 CQAS41 days to heading 11 CQAS43 panicle length 12 CQAS45 spikelet number 13 AQED007 days to maturity 14 CQT1 brown planthopper resistance 15 AQAL017 deep root dry weight 16 CQE29 space 17 CQE30 space to culm ratio 18 CQI10 sodium to potassium ratio 19 CQI11 sodium concentration 20 CQI4 potassium uptake 21 AQFF065 panicle number 22 AQFE053 panicle length 23 AQFE095 plant height 24 AQFE112 awn length 25 AQE052 100-seed weight 26 AQE053 100-seed weight 27 AQEX024 root dry weight 28 AQEX035 root to shoot ratio 29 AQGI013 root dry weight 30 AQGI262 total biomass yield 31 AQAQ007 blast disease resistance 32 AQAQ015 blast disease resistance 33 AQAQ023 blast disease resistance 34 AQBT011 bacterial blight disease resistance 35 AQBT012 bacterial blight disease resistance 36 AQBT013 bacterial blight disease resistance 37 AQCU203 plant height 38 AQFW230 panicle length 39 CQK4 panicle number 40 CQK5 panicle number 41 CQS6 seminal root length 42 AQBE059 tiller number 43 AQDV004 biomass yield 44 AQDV011 days to heading 45 AQDV019 harvest index 46 AQDV039 panicle exsertion 47 AQEA056 plant height 48 AQEA057 plant height 49 AQEA058 plant height 50 AQEA059 plant height 51 AQEA060 plant height 52 AQEA061 plant height 53 AQEA062 plant height 54 AQEA063 plant height 55 AQEA064 plant height 56 AQEA065 plant height 57 AQEA066 plant height 58 AQEA220 days to heading 59 AQEA221 days to heading 60 AQEA222 days to heading 61 AQEA223 days to heading 62 AQEA224 days to heading 63 AQEA225 days to heading 64 AQEA226 days to heading 65 CQAI33 root number 66 CQJ5 panicle number 67 CQV20 plant height 68 AQCN008 days to heading 69 AQCN026 rice yellow mottle virus resistance 70 AQDQ041 panicle length 71 CQAO19 seed weight 72 CQAW15 tiller number 73 AQEO010 seed length Plant developmental stage / tissue details Plant development stage S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0007134 A vegetative growth (+) Plant tissue/organ S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity 1 PO:0000003 whole plant (+) 2 PO:0008037 seedling (+) Others S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity Not found Trait details Not found Physical interaction details Interaction type: protein-protein Not found Interaction type: protein-DNA Not found Related publications [Sorted by year] 1  Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166 PMID [25209982] 2  Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150 PMID [19429605] Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India