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Searching for LOC_Os04g17660
[rhodanese-like domain containing protein, putative, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os04g17660.1 |
154 |
53 |
140 |
PF00581.12 |
Rhodanese |
2 |
LOC_Os04g17660.2 |
154 |
53 |
140 |
PF00581.12 |
Rhodanese |
3 |
LOC_Os04g17660.3 |
129 |
53 |
119 |
PF00581.12 |
Rhodanese |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Not found |
1 |
GO:0016740 |
transferase activity |
(RGAP) |
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Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007048 |
sodium chloride regimen |
(+) |
2 |
EO:0007332 |
cold air temperature regimen |
(+) |
3 |
EO:0007404 |
drought environment |
(+) |
4 |
MCE:1000069 |
dessication/dehydration stress |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
DENOVOPURINE2-PWY |
purine nucleotides de novo biosynthesis I |
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2 |
P121-PWY |
salvage pathways of purine nucleosides |
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3 |
PWY-841 |
purine nucleotides de novo biosynthesis II |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0007134 |
A vegetative growth |
(+) |
Plant tissue/organ
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
PO:0000003 |
whole plant |
(+) |
2 |
PO:0008037 |
seedling |
(+) |
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166
PMID [25209982]
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2 |
Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150
PMID [19429605]
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