Rice gene details
Searching for LOC_Os04g17660 [rhodanese-like domain containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g17660.1 154 53 140 PF00581.12 Rhodanese
2 LOC_Os04g17660.2 154 53 140 PF00581.12 Rhodanese
3 LOC_Os04g17660.3 129 53 119 PF00581.12 Rhodanese
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  -16
IR64 Flag-leaf FC
  18
IR64InfloresenceFC
  1
IR64 Root FC
  -4

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 EO:0007404 drought environment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 DENOVOPURINE2-PWY purine nucleotides de novo biosynthesis I
2 P121-PWY salvage pathways of purine nucleosides
3 PWY-841 purine nucleotides de novo biosynthesis II

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK008 days to heading
2 AQDO005 invitro regeneration ability
3 AQDO009 invitro regeneration ability
4 AQDZ001 lodging incidence
5 CQE28 days to heading
6 CQN14 soluble protein content
7 AQGG003 callus induction
8 CQX2 days to heading
9 CQAS40 plant height
10 CQAS41 days to heading
11 CQAS43 panicle length
12 CQAS45 spikelet number
13 AQED007 days to maturity
14 CQT1 brown planthopper resistance
15 AQAL017 deep root dry weight
16 CQE29 space
17 CQE30 space to culm ratio
18 CQI10 sodium to potassium ratio
19 CQI11 sodium concentration
20 CQI4 potassium uptake
21 AQFF065 panicle number
22 AQFE053 panicle length
23 AQFE095 plant height
24 AQFE112 awn length
25 AQE052 100-seed weight
26 AQE053 100-seed weight
27 AQEX024 root dry weight
28 AQEX035 root to shoot ratio
29 AQGI013 root dry weight
30 AQGI262 total biomass yield
31 AQAQ007 blast disease resistance
32 AQAQ015 blast disease resistance
33 AQAQ023 blast disease resistance
34 AQBT011 bacterial blight disease resistance
35 AQBT012 bacterial blight disease resistance
36 AQBT013 bacterial blight disease resistance
37 AQCU203 plant height
38 AQFW230 panicle length
39 CQK4 panicle number
40 CQK5 panicle number
41 CQS6 seminal root length
42 AQBE059 tiller number
43 AQDV004 biomass yield
44 AQDV011 days to heading
45 AQDV019 harvest index
46 AQDV039 panicle exsertion
47 AQEA056 plant height
48 AQEA057 plant height
49 AQEA058 plant height
50 AQEA059 plant height
51 AQEA060 plant height
52 AQEA061 plant height
53 AQEA062 plant height
54 AQEA063 plant height
55 AQEA064 plant height
56 AQEA065 plant height
57 AQEA066 plant height
58 AQEA220 days to heading
59 AQEA221 days to heading
60 AQEA222 days to heading
61 AQEA223 days to heading
62 AQEA224 days to heading
63 AQEA225 days to heading
64 AQEA226 days to heading
65 CQAI33 root number
66 CQJ5 panicle number
67 CQV20 plant height
68 AQCN008 days to heading
69 AQCN026 rice yellow mottle virus resistance
70 AQDQ041 panicle length
71 CQAO19 seed weight
72 CQAW15 tiller number
73 AQEO010 seed length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007134 A vegetative growth (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ramegowda Venkategowda; Basu Supratim; Krishnan Arjun; Pereira Andy; Rice GROWTH UNDER DROUGHT KINASE Is Required for Drought Tolerance and Grain Yield under Normal and Drought Stress Conditions. Plant physiology 2014:166
PMID [25209982]


Oh Se-Jun; Kim Youn Shic; Kwon Chang-Woo; Park Hye Kyong; Jeong Jin Seo; Kim Ju-Kon; Overexpression of the transcription factor AP37 in rice improves grain yield under drought conditions. Plant Physiology 2009:150
PMID [19429605]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India