Rice gene details
Searching for LOC_Os04g24220 [OsWAK32 - OsWAK receptor-like protein kinase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g24220.1 815 349 377 PF07645.7 EGF_CA
2 LOC_Os04g24220.1 815 474 748 PF00069.17 Pkinase
3 LOC_Os04g24220.2 625 159 187 PF07645.7 EGF_CA
4 LOC_Os04g24220.2 625 284 558 PF00069.17 Pkinase
5 LOC_Os04g24220.3 532 66 94 PF07645.7 EGF_CA
6 LOC_Os04g24220.3 532 191 465 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  5
N22 Root FC
  -3
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016301 kinase activity (RGAP)
2 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0006950 response to stress (RGAP)
3 GO:0009607 response to biotic stimulus (RGAP)
4 GO:0008152 metabolic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0007165 signal transduction (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005773 vacuole (RGAP)
2 GO:0005618 cell wall (RGAP)
3 GO:0005886 plasma membrane (RGAP)
4 GO:0005623 cell (RGAP)
5 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK008 days to heading
2 AQDO005 invitro regeneration ability
3 AQDO009 invitro regeneration ability
4 AQDZ001 lodging incidence
5 CQE28 days to heading
6 CQN14 soluble protein content
7 AQED007 days to maturity
8 CQT1 brown planthopper resistance
9 CQE29 space
10 CQE30 space to culm ratio
11 AQFE053 panicle length
12 AQFE095 plant height
13 AQFE112 awn length
14 AQE052 100-seed weight
15 AQE053 100-seed weight
16 AQGI013 root dry weight
17 AQGI262 total biomass yield
18 AQCN008 days to heading
19 AQCN026 rice yellow mottle virus resistance
20 AQDQ041 panicle length
21 CQAO19 seed weight
22 CQAW15 tiller number
23 AQEO010 seed length
24 AQDQ040 panicle length
25 AQCU260 spikelet fertility
26 AQFR007 seedling vigor
27 AQFW156 leaf width
28 AQFW206 leaf length
29 AQFF060 panicle number
30 AQFT007 root penetration index
31 CQH19 root penetration index
32 AQBK007 seed number
33 CQC4 grain number
34 AQBK005 spikelet number
35 CQC3 spikelet number
36 AQBK014 days to heading

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

de Oliveira Luiz Felipe Valter; Christoff Ana Paula; de Lima Júlio Cesar; de Ross Bruno Comparsi Feijó; Sachetto-Martins Gilberto; Margis-Pinheiro Marcia; Margis Rogerio; The Wall-associated Kinase gene family in rice genomes. Plant science : an international journal of experimental plant biology 2014:229
PMID [25443845]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India