Rice gene details
Searching for LOC_Os04g25650 [cysteine-rich receptor-like protein kinase, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g25650.1 282 84 141 PF01657.9 DUF26
2 LOC_Os04g25650.1 282 212 265 PF01657.9 DUF26
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  11
N22 Root FC
  -14
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -6
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0008150 biological_process (RGAP)
Cellular component
Not found
1 GO:0005576 extracellular region (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK008 days to heading
2 AQDO005 invitro regeneration ability
3 AQDO009 invitro regeneration ability
4 AQDZ001 lodging incidence
5 CQE28 days to heading
6 CQN14 soluble protein content
7 AQED007 days to maturity
8 CQE29 space
9 CQE30 space to culm ratio
10 AQFE053 panicle length
11 AQFE095 plant height
12 AQFE112 awn length
13 AQE052 100-seed weight
14 AQE053 100-seed weight
15 AQGI013 root dry weight
16 AQGI262 total biomass yield
17 AQCN008 days to heading
18 AQCN026 rice yellow mottle virus resistance
19 AQDQ041 panicle length
20 CQAO19 seed weight
21 CQAW15 tiller number
22 AQDQ040 panicle length
23 AQCU260 spikelet fertility
24 AQFR007 seedling vigor
25 AQFW156 leaf width
26 AQFW206 leaf length
27 AQFF060 panicle number
28 AQFT007 root penetration index
29 CQH19 root penetration index
30 AQBK007 seed number
31 CQC4 grain number
32 AQBK005 spikelet number
33 CQC3 spikelet number
34 AQBK014 days to heading
35 AQFE106 grain shattering
36 AQF089 basic vegetative phase
37 AQF097 KClO3 resistance
38 AQF137 mesocotyl length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Lourenço Tiago F; Serra Tânia S; Cordeiro André M; Swanson Sarah J; Gilroy Simon; Saibo Nelson J M; Oliveira M Margarida; The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant physiology 2015:169
PMID [26381316]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India