Rice gene details
Searching for LOC_Os04g29680 [OsWAK38 - OsWAK receptor-like protein kinase, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g29680.1 679 216 256 PF07645.7 EGF_CA
2 LOC_Os04g29680.1 679 340 566 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
 
N22 Root FC
  1
IR64 Flag-leaf FC
  -3
IR64InfloresenceFC
  -4
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0016301 kinase activity (RGAP)
3 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0016043 cellular component organization (RGAP)
3 GO:0009653 anatomical structure morphogenesis (RGAP)
4 GO:0016049 cell growth (RGAP)
5 GO:0019725 cellular homeostasis (RGAP)
6 GO:0006464 protein modification process (RGAP)
7 GO:0008150 biological_process (RGAP)
8 GO:0005975 carbohydrate metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK008 days to heading
2 AQDO005 invitro regeneration ability
3 AQDO009 invitro regeneration ability
4 AQDZ001 lodging incidence
5 CQE28 days to heading
6 CQN14 soluble protein content
7 AQED007 days to maturity
8 CQE29 space
9 CQE30 space to culm ratio
10 AQFE053 panicle length
11 AQFE095 plant height
12 AQFE112 awn length
13 AQE052 100-seed weight
14 AQE053 100-seed weight
15 AQGI013 root dry weight
16 AQGI262 total biomass yield
17 AQCN008 days to heading
18 AQCN026 rice yellow mottle virus resistance
19 AQDQ041 panicle length
20 CQAO19 seed weight
21 CQAW15 tiller number
22 AQDQ040 panicle length
23 AQCU260 spikelet fertility
24 AQFR007 seedling vigor
25 AQFW156 leaf width
26 AQFW206 leaf length
27 AQFF060 panicle number
28 AQFT007 root penetration index
29 CQH19 root penetration index
30 AQBK007 seed number
31 CQC4 grain number
32 AQBK005 spikelet number
33 CQC3 spikelet number
34 AQBK014 days to heading
35 AQFE106 grain shattering
36 AQF089 basic vegetative phase
37 AQF097 KClO3 resistance
38 AQF137 mesocotyl length

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

de Oliveira Luiz Felipe Valter; Christoff Ana Paula; de Lima Júlio Cesar; de Ross Bruno Comparsi Feijó; Sachetto-Martins Gilberto; Margis-Pinheiro Marcia; Margis Rogerio; The Wall-associated Kinase gene family in rice genomes. Plant science : an international journal of experimental plant biology 2014:229
PMID [25443845]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India