Rice gene details
Searching for LOC_Os04g33720 [glycosyl hydrolases, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g33720.1 587 51 377 PF00251.12 Glyco_hydro_32N
2 LOC_Os04g33720.1 587 418 537 PF08244.4 Glyco_hydro_32C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -16
N22 Root FC
  -1
IR64 Flag-leaf FC
  -4
IR64InfloresenceFC
  2
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009737 response to abscisic acid stimulus  
2 GO:0008152 metabolic process (RGAP)
3 GO:0005975 carbohydrate metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007105 abscisic acid regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQGI013 root dry weight
5 AQGI262 total biomass yield
6 AQFF060 panicle number
7 AQFT007 root penetration index
8 CQH19 root penetration index
9 AQBK007 seed number
10 CQC4 grain number
11 AQBK005 spikelet number
12 CQC3 spikelet number
13 AQBK014 days to heading
14 AQA008 tiller number
15 AQHF016 chlorophyll content
16 AQED008 days to maturity
17 AQGD017 grain shattering
18 AQGD023 hull color
19 AQGD025 hull color
20 AQGD027 hull color
21 AQEM009 salt sensitivity
22 CQAC1 blast disease resistance
23 AQFD001 phyllochron
24 AQAT004 days to heading
25 CQX13 panicle length
26 CQX16 internode length
27 AQDV034 spikelet number
28 AQG013 filled grain number
29 CQAX5 plant height
30 AQFA016 grain length to width ratio
31 CQAP2 scent
32 CQAX33 plant height
33 AQDJ013 internode length
34 AQP007 primary branch
35 CQB11 plant height
36 CQB12 grain number
37 CQB13 seed set percent
38 AQCU126 plant height
39 AQCU150 panicle length
40 AQCU162 spikelet number
41 AQCU223 leaf width

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0001012 G early unicellular microspore stage (+)
2 PO:0001059 J bicellular pollen stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009066 anther (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhu Xiaolei; Liang Wanqi; Cui Xiao; Chen Mingjiao; Yin Changsong; Luo Zhijing; Zhu Jiaying; Lucas William J; Wang Zhiyong; Zhang Dabing; Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein. The Plant journal : for cell and molecular biology 2015:82
PMID [25754973]


Oliver Sandra N; Dennis Elizabeth S; Dolferus Rudy; ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant & cell physiology 2007:48
PMID [17693452]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India