Rice gene details
Searching for LOC_Os04g33740 [glycosyl hydrolases, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g33740.1 599 59 384 PF00251.12 Glyco_hydro_32N
2 LOC_Os04g33740.1 599 426 549 PF08244.4 Glyco_hydro_32C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -6
N22 Root FC
  -4
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009617 response to bacterium  
2 GO:0050832 defense response to fungus  
3 GO:0005975 carbohydrate metabolic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0008152 metabolic process (RGAP)
6 GO:0006810 transport (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000296 Xanthomonas oryzae pv. oryzae race P6 (strain PXO99) (+)
2 MCE:1000297 Xanthomonas oryzae pv. oryzae race K1 (strain DY89031) (+)
3 MCE:1000298 Magnaporthe oryzae race ZB1 (strain 2000-2) (+)
4 MCE:1000299 Magnaporthe oryzae race ZB15 (strain 09-31- 1) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQGI013 root dry weight
5 AQGI262 total biomass yield
6 AQFF060 panicle number
7 AQFT007 root penetration index
8 CQH19 root penetration index
9 AQBK007 seed number
10 CQC4 grain number
11 AQBK005 spikelet number
12 CQC3 spikelet number
13 AQBK014 days to heading
14 AQA008 tiller number
15 AQHF016 chlorophyll content
16 AQED008 days to maturity
17 AQGD017 grain shattering
18 AQGD023 hull color
19 AQGD025 hull color
20 AQGD027 hull color
21 AQEM009 salt sensitivity
22 CQAC1 blast disease resistance
23 AQFD001 phyllochron
24 AQAT004 days to heading
25 CQX13 panicle length
26 CQX16 internode length
27 AQDV034 spikelet number
28 AQG013 filled grain number
29 CQAX5 plant height
30 AQFA016 grain length to width ratio
31 CQAP2 scent
32 CQAX33 plant height
33 AQDJ013 internode length
34 AQP007 primary branch
35 CQB11 plant height
36 CQB12 grain number
37 CQB13 seed set percent
38 AQCU126 plant height
39 AQCU150 panicle length
40 AQCU162 spikelet number
41 AQCU223 leaf width

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009039 glume (+)
3 PO:0020103 flag leaf (+)
4 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000004 disease index (+)
2 MCT:1000061 lesion length (+)
3 MCT:1000319 galactose content (+)
4 MCT:1000371 xylose content (+)
5 MCT:1000375 cellulose content (+)
6 MCT:1000533 cell wall thickness (+)
7 MCT:1000534 callose accumulation (+)
8 MCT:2000001 bacterial colony forming units (+)
9 TO:0000023 fungal infection related grain discoloration (+)
10 TO:0000300 glucose content (+)
11 TO:0000328 sucrose content (+)
12 TO:0006005 fructose content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sun Li; Yang Dong-Lei; Kong Yu; Chen Ying; Li Xiao-Zun; Zeng Long-Jun; Li Qun; Wang Er-Tao; He Zu-Hua; Sugar homeostasis mediated by cell wall invertase GRAIN INCOMPLETE FILLING 1 (GIF1) plays a role in pre-existing and induced defence in rice. Molecular plant pathology 2014:15
PMID [24118770]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India