Rice gene details
Searching for LOC_Os04g35600 [OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g35600.1 518 33 141 PF00085.12 Thioredoxin
2 LOC_Os04g35600.1 518 378 482 PF00085.12 Thioredoxin
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -3
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0006950 response to stress (RGAP)
2 GO:0009987 cellular process (RGAP)
3 GO:0000003 reproduction (RGAP)
4 GO:0009791 post-embryonic development (RGAP)
5 GO:0008219 cell death (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0008150 biological_process (RGAP)
9 GO:0009790 embryo development (RGAP)
Cellular component
Not found
1 GO:0016020 membrane (RGAP)
2 GO:0005783 endoplasmic reticulum (RGAP)
3 GO:0009536 plastid (RGAP)
4 GO:0005773 vacuole (RGAP)
5 GO:0009579 thylakoid (RGAP)
6 GO:0005618 cell wall (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (-)
2 EO:0007204 1-naphthaleneacetic acid (-)
3 EO:0007290 kinetin regimen (-)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK007 seed number
5 CQC4 grain number
6 AQBK005 spikelet number
7 CQC3 spikelet number
8 AQBK014 days to heading
9 AQGD017 grain shattering
10 AQGD023 hull color
11 AQGD025 hull color
12 AQGD027 hull color
13 AQEM009 salt sensitivity
14 CQAC1 blast disease resistance
15 AQFD001 phyllochron
16 AQAT004 days to heading
17 CQX13 panicle length
18 CQX16 internode length
19 CQAX5 plant height
20 AQFA016 grain length to width ratio
21 CQAP2 scent
22 CQAX33 plant height
23 AQDJ013 internode length
24 AQP007 primary branch
25 CQB11 plant height
26 CQB12 grain number
27 CQB13 seed set percent
28 AQCU126 plant height
29 AQCU150 panicle length
30 AQCU162 spikelet number
31 AQCU223 leaf width
32 AQEI134 leaf senescence
33 CQY3 germination speed
34 AQHR036 plant height
35 AQFE110 germination speed
36 CQAE9 plant height
37 AQBC105 leaf angle
38 AQBC106 leaf angle
39 AQFF066 panicle number
40 AQFF047 panicle number
41 AQFF052 panicle number
42 CQAS44 panicle number
43 CQAS46 spikelet density
44 CQAS47 seed number
45 CQAS49 1000-seed weight
46 CQAS51 seed number
47 CQAX21 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000107 post-germination stage (-)
2 MCP:1000110 1 day pre-heading stage (-)
3 MCP:1000136 5 days pre-heading stage (-)
4 MCP:1000194 inflorescence 4-5cm stage (-)
5 MCP:1000201 14 days post-heading stage (-)
6 MCP:1000250 inflorescenece secondary branch primordium differentiation stage (-)
7 MCP:1000489 3 days post-anthesis stage (-)
8 MCP:1000518 seedling development stage (-)
9 PO:0007022 imbibition (-)
10 PO:0007041 inflorescence emergence from flag leaf sheath (-)
11 PO:0007071 2.02 main shoot and axillary shoots visible at two nodes (-)
12 PO:0007106 LP.03 three leaves visible (-)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000001 embryo proper (-)
2 PO:0005052 plant callus (-)
3 PO:0006000 Poaceae hull (-)
4 PO:0009005 root (-)
5 PO:0009006 shoot system (-)
6 PO:0009010 seed (-)
7 PO:0009025 vascular leaf (-)
8 PO:0009029 stamen (-)
9 PO:0009047 stem (-)
10 PO:0009049 inflorescence (-)
11 PO:0009051 spikelet (-)
12 PO:0020031 radicle (-)
13 PO:0020103 flag leaf (-)
14 PO:0020104 leaf sheath (-)
15 PO:0025034 leaf (-)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Nuruzzaman Mohammed; Gupta Madhur; Zhang Chengjun; Wang Lei; Xie Weibo; Xiong Lizhong; Zhang Qifa; Lian Xingming; Sequence and expression analysis of the thioredoxin protein gene family in rice. Molecular genetics and genomics 2008:280
PMID [18491141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India