Rice gene details
Searching for LOC_Os04g37619 [zeaxanthin epoxidase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g37619.1 660 77 435 PF01494.11 FAD_binding_3
2 LOC_Os04g37619.1 660 553 629 PF00498.18 FHA
3 LOC_Os04g37619.2 549 77 435 PF01494.11 FAD_binding_3
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  4
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009651 response to salt stress  
3 GO:0009725 response to hormone stimulus  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0010212 response to ionizing radiation  
6 GO:0030912 response to deep water  
7 GO:0009058 biosynthetic process (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0006629 lipid metabolic process (RGAP)
10 GO:0006950 response to stress (RGAP)
11 GO:0009628 response to abiotic stimulus (RGAP)
12 GO:0008152 metabolic process (RGAP)
13 GO:0007165 signal transduction (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007068 ethylene regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007196 light regimen (+)
5 EO:0007270 continuous dark (no light) regimen (+)
6 EO:0007332 cold air temperature regimen (+)
7 EO:0007404 drought environment (+)
8 MCE:1000010 submergence stress (+)
9 MCE:1000241 D-glucose (+)
10 MCE:1000242 D-allose (+)
11 MCE:1000310 nitrogen ion irradiation (+)
12 MCE:1000326 vacuum treatment (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 CAROTENOID-PWY carotenoid biosynthesis
2 PWY-1141 xanthophyll cycle
3 PWY-401 glycolipid biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQFD001 phyllochron
12 AQAT004 days to heading
13 CQX13 panicle length
14 CQX16 internode length
15 CQAX5 plant height
16 AQFA016 grain length to width ratio
17 CQAP2 scent
18 CQAX33 plant height
19 AQCU126 plant height
20 AQCU150 panicle length
21 AQCU162 spikelet number
22 AQCU223 leaf width
23 AQEI134 leaf senescence
24 AQFE110 germination speed
25 CQAE9 plant height
26 AQBC105 leaf angle
27 AQBC106 leaf angle
28 AQFF066 panicle number
29 AQFF047 panicle number
30 AQFF052 panicle number
31 CQAS44 panicle number
32 CQAS46 spikelet density
33 CQAS47 seed number
34 CQAS49 1000-seed weight
35 CQAS51 seed number
36 CQAX21 plant height
37 CQE31 carbon content
38 CQE32 chlorophyll content
39 CQF6 soluble protein content
40 AQAB062 large vascular bundle number
41 AQAE002 chlorophyll content
42 AQAE003 chlorophyll content
43 AQAI020 large vascular bundle number
44 AQGI141 biomass yield
45 AQGI227 total biomass yield
46 AQHR037 plant height
47 AQCQ003 grain yield per plant
48 AQP011 spikelet number
49 AQP018 panicle length
50 AQFP034 culm length
51 CQAN18 plant height
52 CQB10 grain number
53 CQB9 plant height
54 CQAC2 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001012 G early unicellular microspore stage (+)
4 PO:0004506 developing seed stage (+)
5 PO:0007050 FR.03 late stage of fruit ripening (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0009010 seed (+)
5 PO:0009046 flower (+)
6 PO:0009066 anther (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Chen Q F; Ya H Y; Feng Y R; Jiao Z; Expression of the key genes involved in ABA biosynthesis in rice implanted by ion beam. Applied biochemistry and biotechnology 2014:173
PMID [24634194]


2  Fukumoto Takeshi; Kano Akihito; Ohtani Kouhei; Inoue Megumi; Yoshihara Akihide; Izumori Ken; Tajima Shigeyuki; Shigematsu Yoshio; Tanaka Keiji; Ohkouchi Takeo; Ishida Yutaka; Nishizawa Yoko; Tada Yasuomi; Ichimura Kazuya; Gomi Kenji; Yoo Sang-Dong; Sheen Jen; Akimitsu Kazuya; Phosphorylation of D-allose by hexokinase involved in regulation of OsABF1 expression for growth inhibition in Oryza sativa L. Planta 2013:
PMID [23397192]


3  Guo Changkui; Ge Xiaochun; Ma Hong; The rice OsDIL gene plays a role in drought tolerance at vegetative and reproductive stages. Plant molecular biology 2013:82
PMID [23686450]


4  Chaudhary Neetu; Nijhawan Aashima; Khurana Jitendra P; Khurana Paramjit; Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis. Molecular Genetics and Genomics 2010:283
PMID [19890663]


5  Yaish Mahmoud W; El-Kereamy Ashraf; Zhu Tong; Beatty Perrin H; Good Allen G; Bi Yong-Mei; Rothstein Steven J; The APETALA-2-like transcription factor OsAP2-39 controls key interactions between abscisic acid and gibberellin in rice. PLoS genetics 2010:6
PMID [20838584]


6  Welsch Ralf; Wüst Florian; Bär Cornelia; Al-Babili Salim; Beyer Peter; A third phytoene synthase is devoted to abiotic stress-induced abscisic acid formation in rice and defines functional diversification of phytoene synthase genes. Plant Physiology 2008:147
PMID [18326788]


7  Oliver Sandra N; Dennis Elizabeth S; Dolferus Rudy; ABA regulates apoplastic sugar transport and is a potential signal for cold-induced pollen sterility in rice. Plant & cell physiology 2007:48
PMID [17693452]


8  Saika Hiroaki; Okamoto Masanori; Miyoshi Kentaro; Kushiro Tetsuo; Shinoda Shoko; Jikumaru Yusuke; Fujimoto Masaru; Arikawa Taku; Takahashi Hirokazu; Ando Miho; Arimura Shin-Ichi; Miyao Akio; Hirochika Hirohiko; Kamiya Yuji; Tsutsumi Nobuhiro; Nambara Eiji; Nakazono Mikio; Ethylene promotes submergence-induced expression of OsABA8ox1, a gene that encodes ABA 8'-hydroxylase in rice. Plant & cell physiology 2007:48
PMID [17205969]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India