Rice gene details
Searching for LOC_Os04g38410 [chlorophyll A-B binding protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g38410.1 253 64 241 PF00504.13 Chloroa_b-bind
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  2
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009635 response to herbicide  
2 GO:0009628 response to abiotic stimulus (RGAP)
3 GO:0015979 photosynthesis (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)
2 GO:0009536 plastid (RGAP)
3 GO:0009579 thylakoid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007235 silicon nutrient regimen (+)
2 EO:0007309 zinc nutrient regimen (+)
3 MCE:1000351 5-aminolevulinic acid (+)
4 MCE:1000352 oxyfluorfen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQAT004 days to heading
12 CQX13 panicle length
13 CQX16 internode length
14 CQAX5 plant height
15 AQFA016 grain length to width ratio
16 CQAP2 scent
17 CQAX33 plant height
18 AQCU126 plant height
19 AQCU150 panicle length
20 AQCU162 spikelet number
21 AQCU223 leaf width
22 AQFE110 germination speed
23 CQAE9 plant height
24 AQBC105 leaf angle
25 AQBC106 leaf angle
26 AQFF066 panicle number
27 AQFF047 panicle number
28 AQFF052 panicle number
29 CQAS44 panicle number
30 CQAS46 spikelet density
31 CQAS47 seed number
32 CQAS49 1000-seed weight
33 CQAS51 seed number
34 CQAX21 plant height
35 CQE31 carbon content
36 CQE32 chlorophyll content
37 CQF6 soluble protein content
38 AQAB062 large vascular bundle number
39 AQAE002 chlorophyll content
40 AQAE003 chlorophyll content
41 AQAI020 large vascular bundle number
42 AQGI141 biomass yield
43 AQGI227 total biomass yield
44 AQHR037 plant height
45 AQCQ003 grain yield per plant
46 AQP011 spikelet number
47 AQP018 panicle length
48 AQFP034 culm length
49 CQAN18 plant height
50 CQB10 grain number
51 CQB9 plant height
52 CQAC2 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Phung Thu-Ha; Jung Sunyo; Perturbed porphyrin biosynthesis contributes to differential herbicidal symptoms in photodynamically stressed rice (Oryza sativa) treated with 5-aminolevulinic acid and oxyfluorfen. Pesticide biochemistry and physiology 2014:116
PMID [25454526]


Song Alin; Li Ping; Fan Fenliang; Li Zhaojun; Liang Yongchao; The effect of Silicon on photosynthesis and expression of its relevant genes in rice (Oryza sativa L.) under high-zinc stress. PloS one 2014:9
PMID [25426937]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India