Rice gene details
Searching for LOC_Os04g38570 [multidrug resistance protein, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g38570.1 1260 44 323 PF00664.15 ABC_membrane
2 LOC_Os04g38570.1 1260 398 582 PF00005.19 ABC_tran
3 LOC_Os04g38570.1 1260 694 970 PF00664.15 ABC_membrane
4 LOC_Os04g38570.1 1260 1045 1229 PF00005.19 ABC_tran
5 LOC_Os04g38570.2 990 128 312 PF00005.19 ABC_tran
6 LOC_Os04g38570.2 990 424 700 PF00664.15 ABC_membrane
7 LOC_Os04g38570.2 990 775 959 PF00005.19 ABC_tran
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  2
N22 Root FC
  -21
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity  
2 GO:0022892 substrate-specific transporter activity  
3 GO:0005515 protein binding (RGAP)
4 GO:0005215 transporter activity (RGAP)
5 GO:0016787 hydrolase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009733 response to auxin stimulus  
2 GO:0010541 acropetal auxin transport  
3 GO:0060918 auxin transport  
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009628 response to abiotic stimulus (RGAP)
6 GO:0009606 tropism (RGAP)
7 GO:0009908 flower development (RGAP)
8 GO:0009791 post-embryonic development (RGAP)
9 GO:0006810 transport (RGAP)
10 GO:0007165 signal transduction (RGAP)
11 GO:0009987 cellular process (RGAP)
12 GO:0016043 cellular component organization (RGAP)
13 GO:0007275 multicellular organismal development (RGAP)
14 GO:0009605 response to external stimulus (RGAP)
15 GO:0009056 catabolic process (RGAP)
16 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0016020 membrane (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007069 gibberellic acid regimen (+)
2 EO:0007070 indole acetic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007291 benzyladenine regimen (+)
7 MCE:1000143 iron deficiency treatment (+)
8 MCE:1000239 1-naphthylphthalamic acid (NPA) (+)
9 MCE:1000240 1-naphthoxyacetic acids (1-NOA) (+)
10 MCE:1000332 naphthylacetic acid (NAA) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQAT004 days to heading
12 CQX13 panicle length
13 CQX16 internode length
14 CQAX5 plant height
15 AQFA016 grain length to width ratio
16 CQAP2 scent
17 CQAX33 plant height
18 AQCU126 plant height
19 AQCU150 panicle length
20 AQCU162 spikelet number
21 AQCU223 leaf width
22 AQFE110 germination speed
23 CQAE9 plant height
24 AQBC105 leaf angle
25 AQBC106 leaf angle
26 AQFF066 panicle number
27 AQFF047 panicle number
28 AQFF052 panicle number
29 CQAS44 panicle number
30 CQAS46 spikelet density
31 CQAS47 seed number
32 CQAS49 1000-seed weight
33 CQAS51 seed number
34 CQAX21 plant height
35 CQE31 carbon content
36 CQE32 chlorophyll content
37 CQF6 soluble protein content
38 AQAB062 large vascular bundle number
39 AQAE002 chlorophyll content
40 AQAE003 chlorophyll content
41 AQAI020 large vascular bundle number
42 AQGI141 biomass yield
43 AQGI227 total biomass yield
44 AQHR037 plant height
45 AQCQ003 grain yield per plant
46 AQP011 spikelet number
47 AQP018 panicle length
48 AQFP034 culm length
49 CQAN18 plant height
50 CQB10 grain number
51 CQB9 plant height
52 CQAC2 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007001 FR.01 early stage of fruit ripening (+)
3 PO:0007014 booting (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000060 root/shoot junction (+)
2 MCP:1000096 first shoot internode (+)
3 MCP:1000097 third shoot internode (+)
4 MCP:1000237 second shoot internode (+)
5 MCP:1000246 fourth shoot internode (+)
6 MCP:1000259 root segment, 1-2cm from root tip (+)
7 MCP:1000440 first shoot node (+)
8 MCP:1000589 second shoot node (+)
9 MCP:1000590 third shoot node (+)
10 PO:0000003 whole plant (+)
11 PO:0000025 root tip (+)
12 PO:0008037 seedling (+)
13 PO:0008039 stem base (+)
14 PO:0009005 root (+)
15 PO:0009006 shoot system (+)
16 PO:0009010 seed (+)
17 PO:0009049 inflorescence (+)
18 PO:0009051 spikelet (+)
19 PO:0020039 leaf lamina (+)
20 PO:0020103 flag leaf (+)
21 PO:0020104 leaf sheath (+)
22 PO:0020127 primary root (+)
23 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000343 primary root length (+)
2 MCT:1000629 auxin accumulation (+)
3 TO:0000019 seedling height (+)
4 TO:0000495 chlorophyll content (+)
5 TO:0006049 iron concentration (+)
6 TO:0020106 Indole-3-acetic acid content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wang Suikang; Xu Yanxia; Li Zhilan; Zhang Saina; Lim Jae-Min; Lee Kyun Oh; Li Chuanyou; Qian Qian; Jiang Dean; Qi Yanhua; OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:
PMID [24597623]


2  Xu Yanxia; Zhang Saina; Guo Haipeng; Wang Suikang; Xu Ligen; Li Chuanyou; Qian Qian; Chen Fan; Geisler Markus; Qi Yanhua; Jiang De An; OsABCB14 functions in auxin transport and iron homeostasis in rice (Oryza sativa L.). The Plant journal : for cell and molecular biology 2014:79
PMID [24798203]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India