Rice gene details
Searching for LOC_Os04g38950 [class I glutamine amidotransferase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g38950.1 289 85 275 PF00117.20 GATase
2 LOC_Os04g38950.2 227 85 206 PF00117.20 GATase
3 LOC_Os04g38950.3 141 85 138 PF00117.20 GATase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -3
N22 Root FC
  -1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  5
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009791 post-embryonic development (RGAP)
2 GO:0006950 response to stress (RGAP)
3 GO:0009628 response to abiotic stimulus (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000103 fluridone (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-1001 cellulose biosynthesis

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQAT004 days to heading
12 CQX13 panicle length
13 CQX16 internode length
14 CQAX5 plant height
15 AQFA016 grain length to width ratio
16 CQAP2 scent
17 CQAX33 plant height
18 AQCU126 plant height
19 AQCU150 panicle length
20 AQCU162 spikelet number
21 AQCU223 leaf width
22 AQFE110 germination speed
23 CQAE9 plant height
24 AQBC105 leaf angle
25 AQBC106 leaf angle
26 AQFF066 panicle number
27 AQFF047 panicle number
28 AQFF052 panicle number
29 CQAS44 panicle number
30 CQAS46 spikelet density
31 CQAS47 seed number
32 CQAS49 1000-seed weight
33 CQAS51 seed number
34 CQAX21 plant height
35 CQE31 carbon content
36 CQE32 chlorophyll content
37 CQF6 soluble protein content
38 AQAB062 large vascular bundle number
39 AQAE002 chlorophyll content
40 AQAE003 chlorophyll content
41 AQAI020 large vascular bundle number
42 AQGI141 biomass yield
43 AQGI227 total biomass yield
44 AQHR037 plant height
45 AQCQ003 grain yield per plant
46 AQP011 spikelet number
47 AQP018 panicle length
48 AQFP034 culm length
49 CQAN18 plant height
50 CQB10 grain number
51 CQB9 plant height
52 CQAC2 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Du Hao; Wu Nai; Chang Yu; Li Xianghua; Xiao Jinghua; Xiong Lizhong; Carotenoid deficiency impairs ABA and IAA biosynthesis and differentially affects drought and cold tolerance in rice. Plant molecular biology 2013:83
PMID [23846670]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India