Rice gene details
Searching for LOC_Os04g39020 [aldehyde dehydrogenase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g39020.1 506 18 487 PF00171.14 Aldedh
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  1
N22 Root FC
  2
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009651 response to salt stress  
4 GO:0009737 response to abscisic acid stimulus  
5 GO:0010555 response to mannitol stimulus  
6 GO:0006950 response to stress (RGAP)
7 GO:0009628 response to abiotic stimulus (RGAP)
8 GO:0008152 metabolic process (RGAP)
9 GO:0009719 response to endogenous stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005777 peroxisome (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007174 cold temperature regimen (+)
4 EO:0007404 drought environment (+)
5 MCE:1000016 polyethylene glycol (PEG) treatment (+)
6 MCE:1000044 mannitol (+)
7 MCE:1000348 acetaldehyde (+)
8 MCE:1000349 betaine aldehyde (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 ARGASEDEG-PWY arginine degradation I (arginase pathway)
2 CITRULBIO-PWY citrulline biosynthesis
3 HYDROXYPRODEG-PWY 4-hydroxyproline degradation I
4 PROLINE-SYN2-PWY proline biosynthesis II
5 PROSYN-PWY proline biosynthesis I
6 PROUT-PWY proline degradation I
7 PWY-4561 proline degradation II
8 PWY1F-353 glycine betaine biosynthesis III (plants)

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQAT004 days to heading
12 CQX13 panicle length
13 CQX16 internode length
14 CQAX5 plant height
15 AQFA016 grain length to width ratio
16 CQAP2 scent
17 CQAX33 plant height
18 AQCU126 plant height
19 AQCU150 panicle length
20 AQCU162 spikelet number
21 AQCU223 leaf width
22 AQFE110 germination speed
23 CQAE9 plant height
24 AQBC105 leaf angle
25 AQBC106 leaf angle
26 AQFF066 panicle number
27 AQFF047 panicle number
28 AQFF052 panicle number
29 CQAS44 panicle number
30 CQAS46 spikelet density
31 CQAS47 seed number
32 CQAS49 1000-seed weight
33 CQAS51 seed number
34 CQAX21 plant height
35 CQE31 carbon content
36 CQE32 chlorophyll content
37 CQF6 soluble protein content
38 AQAB062 large vascular bundle number
39 AQAE002 chlorophyll content
40 AQAE003 chlorophyll content
41 AQAI020 large vascular bundle number
42 AQGI141 biomass yield
43 AQGI227 total biomass yield
44 AQHR037 plant height
45 AQCQ003 grain yield per plant
46 AQP011 spikelet number
47 AQP018 panicle length
48 AQFP034 culm length
49 CQAN18 plant height
50 CQB10 grain number
51 CQB9 plant height
52 CQAC2 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000588 flower-15cm long, stage (+)
3 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000581 young flower (+)
2 PO:0000003 whole plant (+)
3 PO:0006339 juvenile leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009046 flower (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020142 stem internode (+)
11 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000037 malondialdehyde (MDA) content (+)
2 MCT:1000208 leaf whitening (+)
3 MCT:1000504 seedling fresh weight (+)
4 MCT:1000653 betaine aldehyde dehydrogenase activity (+)
5 TO:0000019 seedling height (+)
6 TO:0000207 plant height (+)
7 TO:0000227 root length (+)
8 TO:0000590 grain weight (+)
9 TO:0000592 1000-dehulled grain weight (+)
10 TO:0000593 polished grain weight (+)
11 TO:0000605 hydrogen peroxide content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Tang Wei; Sun Jiaqi; Liu Jia; Liu Fangfang; Yan Jun; Gou Xiaojun; Lu Bao-Rong; Liu Yongsheng; RNAi-directed downregulation of betaine aldehyde dehydrogenase 1 (OsBADH1) results in decreased stress tolerance and increased oxidative markers without affecting glycine betaine biosynthesis in rice (Oryza sativa). Plant molecular biology 2014:86
PMID [25150410]


2  Gao Chenxi; Han Bin; Evolutionary and expression study of the aldehyde dehydrogenase (ALDH) gene superfamily in rice (Oryza sativa). Gene 2009:431
PMID [19071198]


3  Niu Xiangli; Tang Wei; Huang Weizao; Ren Guangjun; Wang Qilin; Luo Di; Xiao Yingyong; Yang Shimei; Wang Feng; Lu Bao-Rong; Gao Fangyuan; Lu Tiegang; Liu Yongsheng; RNAi-directed downregulation of OsBADH2 results in aroma (2-acetyl-1-pyrroline) production in rice (Oryza sativa L.). BMC Plant Biology 2008:8
PMID [18840300]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India