Rice gene details
Searching for LOC_Os04g39430 [cytochrome P450, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g39430.1 481 224 461 PF00067.14 p450
2 LOC_Os04g39430.2 347 224 345 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  11
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0016043 cellular component organization (RGAP)
2 GO:0009653 anatomical structure morphogenesis (RGAP)
3 GO:0016049 cell growth (RGAP)
4 GO:0009719 response to endogenous stimulus (RGAP)
5 GO:0009058 biosynthetic process (RGAP)
6 GO:0006629 lipid metabolic process (RGAP)
7 GO:0008152 metabolic process (RGAP)
8 GO:0007165 signal transduction (RGAP)
9 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found
1 GO:0005783 endoplasmic reticulum (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-621 sucrose degradation III

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQAT004 days to heading
12 CQX13 panicle length
13 CQX16 internode length
14 CQAX5 plant height
15 AQFA016 grain length to width ratio
16 CQAP2 scent
17 CQAX33 plant height
18 AQCU126 plant height
19 AQCU150 panicle length
20 AQCU162 spikelet number
21 AQCU223 leaf width
22 AQFE110 germination speed
23 CQAE9 plant height
24 AQBC105 leaf angle
25 AQBC106 leaf angle
26 AQFF066 panicle number
27 AQFF047 panicle number
28 AQFF052 panicle number
29 CQAS44 panicle number
30 CQAS46 spikelet density
31 CQAS47 seed number
32 CQAS49 1000-seed weight
33 CQAS51 seed number
34 CQAX21 plant height
35 CQE31 carbon content
36 CQE32 chlorophyll content
37 CQF6 soluble protein content
38 AQAB062 large vascular bundle number
39 AQAE002 chlorophyll content
40 AQAE003 chlorophyll content
41 AQAI020 large vascular bundle number
42 AQGI141 biomass yield
43 AQGI227 total biomass yield
44 AQHR037 plant height
45 AQCQ003 grain yield per plant
46 AQP011 spikelet number
47 AQP018 panicle length
48 AQFP034 culm length
49 CQAN18 plant height
50 CQB10 grain number
51 CQB9 plant height
52 CQAC2 blast disease resistance

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
2 PO:0009066 anther (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhu Xiaolei; Liang Wanqi; Cui Xiao; Chen Mingjiao; Yin Changsong; Luo Zhijing; Zhu Jiaying; Lucas William J; Wang Zhiyong; Zhang Dabing; Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein. The Plant journal : for cell and molecular biology 2015:82
PMID [25754973]


Song Yaling; You Jun; Xiong Lizhong; Characterization of OsIAA1 gene, a member of rice Aux/IAA family involved in auxin and brassinosteroid hormone responses and plant morphogenesis. Plant Molecular Biology 2009:70
PMID [19266169]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India