Rice gene details
Searching for LOC_Os04g40880 [nucleotide-binding protein 1, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g40880.1 359 183 258 PF10609.1 ParA
2 LOC_Os04g40880.2 359 183 258 PF10609.1 ParA
3 LOC_Os04g40880.3 347 171 246 PF10609.1 ParA
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  2
N22InfloresenceFC
  -1
N22 Root FC
  3
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  4
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0000166 nucleotide binding (RGAP)
2 GO:0005488 binding (RGAP)
3 GO:0005515 protein binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0006979 response to oxidative stress  
3 GO:0009412 response to heavy metal  
4 GO:0010288 response to lead ion  
5 GO:0046686 response to cadmium ion  
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007223 cadmium chloride (+)
2 MCE:1000008 methyl viologen (MV) (+)
3 MCE:1000138 lead nitrate regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 AQAT004 days to heading
12 CQX13 panicle length
13 CQX16 internode length
14 CQAX5 plant height
15 AQFA016 grain length to width ratio
16 CQAP2 scent
17 CQAX33 plant height
18 AQCU126 plant height
19 AQCU150 panicle length
20 AQCU162 spikelet number
21 AQCU223 leaf width
22 AQFE110 germination speed
23 CQAE9 plant height
24 AQFF066 panicle number
25 AQFF047 panicle number
26 AQFF052 panicle number
27 CQAS44 panicle number
28 CQAS46 spikelet density
29 CQAS47 seed number
30 CQAS49 1000-seed weight
31 CQAS51 seed number
32 CQAX21 plant height
33 CQE31 carbon content
34 CQE32 chlorophyll content
35 CQF6 soluble protein content
36 AQAB062 large vascular bundle number
37 AQAE002 chlorophyll content
38 AQAE003 chlorophyll content
39 AQAI020 large vascular bundle number
40 AQGI141 biomass yield
41 AQGI227 total biomass yield
42 AQHR037 plant height
43 AQCQ003 grain yield per plant
44 AQP011 spikelet number
45 AQP018 panicle length
46 AQFP034 culm length
47 CQAN18 plant height
48 CQB10 grain number
49 CQB9 plant height
50 CQAC2 blast disease resistance
51 AQCF031 spikelet fertility

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India