Rice gene details
Searching for LOC_Os04g43070 [ammonium transporter protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g43070.1 499 36 459 PF00909.13 Ammonium_transp
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  4
N22InfloresenceFC
  -1
N22 Root FC
  -7
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  2
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0015696 ammonium transport  
2 GO:0060359 response to ammonium ion  
3 GO:0006810 transport (RGAP)
4 GO:0009653 anatomical structure morphogenesis (RGAP)
5 GO:0009791 post-embryonic development (RGAP)
6 GO:0009719 response to endogenous stimulus (RGAP)
7 GO:0016043 cellular component organization (RGAP)
8 GO:0009987 cellular process (RGAP)
9 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0016020 membrane (RGAP)
3 GO:0005634 nucleus (RGAP)
4 GO:0005575 cellular_component (RGAP)
5 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007097 ammonium sulfate regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD017 grain shattering
8 AQGD023 hull color
9 AQGD025 hull color
10 AQGD027 hull color
11 CQX13 panicle length
12 CQX16 internode length
13 AQFA016 grain length to width ratio
14 CQAP2 scent
15 CQAX33 plant height
16 AQCU126 plant height
17 AQCU150 panicle length
18 AQCU162 spikelet number
19 AQCU223 leaf width
20 AQFE110 germination speed
21 CQAE9 plant height
22 AQFF066 panicle number
23 AQFF047 panicle number
24 AQFF052 panicle number
25 CQAS44 panicle number
26 CQAS46 spikelet density
27 CQAS47 seed number
28 CQAS49 1000-seed weight
29 CQAS51 seed number
30 CQAX21 plant height
31 CQE31 carbon content
32 CQE32 chlorophyll content
33 CQF6 soluble protein content
34 AQAB062 large vascular bundle number
35 AQAE002 chlorophyll content
36 AQAE003 chlorophyll content
37 AQAI020 large vascular bundle number
38 AQGI141 biomass yield
39 AQGI227 total biomass yield
40 AQHR037 plant height
41 AQCQ003 grain yield per plant
42 AQP011 spikelet number
43 AQP018 panicle length
44 AQFP034 culm length
45 CQAN18 plant height
46 CQB10 grain number
47 CQB9 plant height
48 CQAC2 blast disease resistance
49 AQCF031 spikelet fertility
50 AQCI011 phosphorus sensitivity
51 AQFF008 total biomass yield
52 AQDO008 invitro regeneration ability
53 AQFF031 spikelet number
54 AQFF036 spikelet number
55 AQFE015 days to heading
56 CQAW13 tiller number
57 AQFE031 grain number
58 AQFE059 seed set percent
59 AQFE060 seed set percent
60 AQFE061 seed set percent

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001053 3 leaf fully expanded (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000257 xylem sap (+)
2 MCP:1000538 root segment, 50mm from root tip (+)
3 PO:0000003 whole plant (+)
4 PO:0000042 shoot-borne root (+)
5 PO:0000252 endodermis (+)
6 PO:0006339 juvenile leaf (+)
7 PO:0008037 seedling (+)
8 PO:0009001 fruit (+)
9 PO:0009005 root (+)
10 PO:0009006 shoot system (+)
11 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000121 root growth (+)
2 MCT:1000389 presence of discontinuous suberin lamellae (+)
3 MCT:1000527 glutamine content (+)
4 MCT:1000531 ammonium ion (NH4+) concentration (+)
5 MCT:1000541 filled grain number per plant (+)
6 MCT:1000552 solute permeability (+)
7 MCT:1000553 root pressure (+)
8 MCT:1000554 ammonium ion (NH4+) influx (+)
9 TO:0000019 seedling height (+)
10 TO:0000078 root dry weight (+)
11 TO:0000152 panicle number (+)
12 TO:0000227 root length (+)
13 TO:0000328 sucrose content (+)
14 TO:0000396 grain yield (+)
15 TO:0000495 chlorophyll content (+)
16 TO:0000496 carotenoid content (+)
17 TO:0000552 shoot dry weight (+)
18 TO:0000702 starch concentration (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ranathunge Kosala; El-Kereamy Ashraf; Gidda Satinder; Bi Yong-Mei; Rothstein Steven J; AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions. Journal of experimental botany 2014:65
PMID [24420570]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India