Rice gene details
Searching for LOC_Os04g46960 [glutathione peroxidase domain containing protein, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g46960.1 198 10 118 PF00255.11 GSHPx
2 LOC_Os04g46960.2 169 10 118 PF00255.11 GSHPx
3 LOC_Os04g46960.3 168 10 118 PF00255.11 GSHPx
4 LOC_Os04g46960.4 86 10 33 PF00255.11 GSHPx
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  9
N22InfloresenceFC
  2
N22 Root FC
  -4
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  2
IR64 Root FC
  -3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003824 catalytic activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0010269 response to selenium ion  
2 GO:0046685 response to arsenic-containing substance  
3 GO:0008152 metabolic process (RGAP)
4 GO:0008150 biological_process (RGAP)
5 GO:0006950 response to stress (RGAP)
6 GO:0009628 response to abiotic stimulus (RGAP)
7 GO:0009058 biosynthetic process (RGAP)
8 GO:0006464 protein modification process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005829 cytosol (RGAP)
2 GO:0005739 mitochondrion (RGAP)
3 GO:0005886 plasma membrane (RGAP)
4 GO:0009536 plastid (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000345 sodium arsenite (Na2HAsO2) (+)
2 MCE:1000346 sodium selenite (Na2O3Se) (+)

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-5340 sulfate activation for sulfonation

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 CQX13 panicle length
11 CQX16 internode length
12 AQFA016 grain length to width ratio
13 CQAP2 scent
14 CQAX33 plant height
15 AQCU126 plant height
16 AQCU150 panicle length
17 AQCU162 spikelet number
18 AQCU223 leaf width
19 AQFE110 germination speed
20 CQAE9 plant height
21 AQFF066 panicle number
22 AQFF047 panicle number
23 AQFF052 panicle number
24 CQAS44 panicle number
25 CQAS46 spikelet density
26 CQAS47 seed number
27 CQAS49 1000-seed weight
28 CQAS51 seed number
29 CQAX21 plant height
30 AQCQ003 grain yield per plant
31 AQFP034 culm length
32 CQAN18 plant height
33 CQB10 grain number
34 CQB9 plant height
35 CQAC2 blast disease resistance
36 AQCF031 spikelet fertility
37 AQCI011 phosphorus sensitivity
38 AQFF008 total biomass yield
39 AQDO008 invitro regeneration ability
40 AQFF031 spikelet number
41 AQFF036 spikelet number
42 AQFE015 days to heading
43 CQAW13 tiller number
44 AQFE031 grain number
45 AQFE059 seed set percent
46 AQFE060 seed set percent
47 AQFE061 seed set percent
48 CQE33 shoot elongation rate
49 AQEI038 leaf senescence
50 AQEI092 leaf senescence
51 AQFJ019 spikelet number
52 AQDU015 cold tolerance
53 AQGM021 spikelet fertility
54 CQAA15 leaf yellowing tolerance
55 AQAI037 leaf area to spikelet number ratio
56 AQEX003 plant height
57 AQGI202 total biomass yield
58 AQFB001 seed dormancy
59 AQFB002 seed dormancy
60 AQFB003 seed dormancy
61 CQN33 leaf senescence
62 CQN34 leaf senescence
63 CQG4 leaf rolling time
64 CQN13 nadh-dependent glutamate synthase content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000441 glutathione peroxidase (GPX) activity (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kumar Amit; Singh Rana Pratap; Singh Pradyumna Kumar; Awasthi Surabhi; Chakrabarty Debasis; Trivedi Prabodh Kumar; Tripathi Rudra Deo; Selenium ameliorates arsenic induced oxidative stress through modulation of antioxidant enzymes and thiols in rice (Oryza sativa L.). Ecotoxicology (London, England) 2014:23
PMID [24985886]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India