Rice gene details
Searching for LOC_Os04g47250 [cytochrome P450, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g47250.1 546 27 518 PF00067.14 p450
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -7
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -1
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0019825 oxygen binding (RGAP)
2 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009987 cellular process (RGAP)
2 GO:0006629 lipid metabolic process (RGAP)
3 GO:0008152 metabolic process (RGAP)
Cellular component
Not found

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007024 aerobic environment (+)
2 MCE:1000195 hypoxic environment (+)
3 MCE:1000330 nitrogen flushing (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 CQX13 panicle length
11 CQX16 internode length
12 AQFA016 grain length to width ratio
13 CQAP2 scent
14 CQAX33 plant height
15 AQCU126 plant height
16 AQCU150 panicle length
17 AQCU162 spikelet number
18 AQCU223 leaf width
19 AQFE110 germination speed
20 CQAE9 plant height
21 AQFF066 panicle number
22 AQFF047 panicle number
23 AQFF052 panicle number
24 CQAS44 panicle number
25 CQAS46 spikelet density
26 CQAS47 seed number
27 CQAS49 1000-seed weight
28 CQAS51 seed number
29 CQAX21 plant height
30 AQCQ003 grain yield per plant
31 AQFP034 culm length
32 CQAN18 plant height
33 CQB10 grain number
34 CQB9 plant height
35 CQAC2 blast disease resistance
36 AQCF031 spikelet fertility
37 AQFF008 total biomass yield
38 AQDO008 invitro regeneration ability
39 AQFF031 spikelet number
40 AQFF036 spikelet number
41 AQFE015 days to heading
42 CQAW13 tiller number
43 AQFE031 grain number
44 AQFE059 seed set percent
45 AQFE060 seed set percent
46 AQFE061 seed set percent
47 CQE33 shoot elongation rate
48 AQEI038 leaf senescence
49 AQEI092 leaf senescence
50 AQFJ019 spikelet number
51 AQDU015 cold tolerance
52 AQGM021 spikelet fertility
53 CQAA15 leaf yellowing tolerance
54 AQAI037 leaf area to spikelet number ratio
55 AQEX003 plant height
56 AQGI202 total biomass yield
57 AQFB001 seed dormancy
58 AQFB002 seed dormancy
59 AQFB003 seed dormancy
60 CQN33 leaf senescence
61 CQN34 leaf senescence
62 CQG4 leaf rolling time
63 CQN13 nadh-dependent glutamate synthase content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000422 cortical parenchyma cell (+)
2 MCP:1000559 long adventitious root (+)
3 MCP:1000560 short adventitious root (-)
4 PO:0005427 sclerenchyma (+)
5 PO:0005772 exodermis (+)
6 PO:0008037 seedling (+)
7 PO:0020124 root stele (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Shiono Katsuhiro; Yamauchi Takaki; Yamazaki So; Mohanty Bijayalaxmi; Malik Al Imran; Nagamura Yoshiaki; Nishizawa Naoko K; Tsutsumi Nobuhiro; Colmer Timothy D; Nakazono Mikio; Microarray analysis of laser-microdissected tissues indicates the biosynthesis of suberin in the outer part of roots during formation of a barrier to radial oxygen loss in rice (Oryza sativa). Journal of experimental botany 2014:65
PMID [24913626]


Wang Youhua; Wan Liyun; Zhang Lixia; Zhang Zhijin; Zhang Haiwen; Quan Ruidang; Zhou Shirong; Huang Rongfeng; An ethylene response factor OsWR1 responsive to drought stress transcriptionally activates wax synthesis related genes and increases wax production in rice. Plant Molecular Biology 2011:
PMID [22130861]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India