Rice gene details
Searching for LOC_Os04g50060 [GRAS family transcription factor domain containing protein, expressed ]


Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0001010 sequence-specific DNA binding transcription factor recruiting transcription factor activity  
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009058 biosynthetic process (RGAP)
2 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
3 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)
3 GO:0005829 cytosol (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007080 jasmonic acid regimen (+)
4 EO:0007105 abscisic acid regimen (+)
5 MCE:1000008 methyl viologen (MV) (+)
6 MCE:1000016 polyethylene glycol (PEG) treatment (+)
7 MCE:1000069 dessication/dehydration stress (+)
8 MCE:1000101 severe drought stress in sheltered field (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 AQFA016 grain length to width ratio
11 CQAP2 scent
12 CQAX33 plant height
13 AQCU126 plant height
14 AQCU150 panicle length
15 AQCU162 spikelet number
16 AQCU223 leaf width
17 AQFF047 panicle number
18 AQFF052 panicle number
19 CQAS44 panicle number
20 CQAS46 spikelet density
21 CQAS47 seed number
22 CQAS49 1000-seed weight
23 CQAS51 seed number
24 CQAX21 plant height
25 AQCQ003 grain yield per plant
26 CQB10 grain number
27 CQB9 plant height
28 CQAC2 blast disease resistance
29 AQCF031 spikelet fertility
30 AQDO008 invitro regeneration ability
31 AQFF031 spikelet number
32 AQFF036 spikelet number
33 CQAW13 tiller number
34 AQFE031 grain number
35 AQFE059 seed set percent
36 AQFE060 seed set percent
37 AQFE061 seed set percent
38 AQAI037 leaf area to spikelet number ratio
39 AQEX003 plant height
40 AQGI202 total biomass yield
41 AQFB001 seed dormancy
42 AQFB002 seed dormancy
43 AQFB003 seed dormancy
44 CQG4 leaf rolling time
45 CQN13 nadh-dependent glutamate synthase content
46 AQA017 root length
47 AQG010 panicle number
48 AQG011 spikelet number
49 AQG012 spikelet number
50 CQO3 cold tolerance
51 CQO4 anther length
52 AQDO004 invitro regeneration ability
53 CQN32 leaf senescence
54 AQAX012 carbohydrate content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007615 flower development stages (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000362 fourth leaf from base (+)
2 PO:0008037 seedling (+)
3 PO:0009005 root (+)
4 PO:0009047 stem (+)
5 PO:0009049 inflorescence (+)
6 PO:0020104 leaf sheath (+)
7 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000012 survival rate (+)
2 MCT:1000034 superoxide dismutase (SOD) activity (+)
3 MCT:1000035 peroxidase (POD) activity (+)
4 TO:0000449 grain yield per plant (+)
5 TO:0000495 chlorophyll content (+)
6 TO:0000605 hydrogen peroxide content (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Xu Kai; Chen Shoujun; Li Tianfei; Ma Xiaosong; Liang Xiaohua; Ding Xuefeng; Liu Hongyan; Luo Lijun; OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes. BMC plant biology 2015:15
PMID [26067440]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India