Rice gene details
Searching for LOC_Os04g51190 [growth-regulating factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g51190.1 388 52 88 PF08880.3 QLQ
2 LOC_Os04g51190.1 388 114 159 PF08879.2 WRC
3 LOC_Os04g51190.2 388 52 88 PF08880.3 QLQ
4 LOC_Os04g51190.2 388 114 159 PF08879.2 WRC
5 LOC_Os04g51190.3 385 52 88 PF08880.3 QLQ
6 LOC_Os04g51190.3 385 114 159 PF08879.2 WRC
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  9
IR64InfloresenceFC
  2
IR64 Root FC
  2

Functional details
Molecular Function
Not found
Biological process
Not found
1 GO:0007275 multicellular organismal development (RGAP)
Cellular component
Not found
1 GO:0005634 nucleus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 AQFA016 grain length to width ratio
11 CQAP2 scent
12 CQAX33 plant height
13 AQCU126 plant height
14 AQCU150 panicle length
15 AQCU162 spikelet number
16 AQCU223 leaf width
17 AQFF047 panicle number
18 AQFF052 panicle number
19 CQAS44 panicle number
20 CQAS46 spikelet density
21 CQAS47 seed number
22 CQAS49 1000-seed weight
23 CQAS51 seed number
24 CQAX21 plant height
25 AQCQ003 grain yield per plant
26 CQB10 grain number
27 CQB9 plant height
28 CQAC2 blast disease resistance
29 AQCF031 spikelet fertility
30 AQDO008 invitro regeneration ability
31 AQFF031 spikelet number
32 AQFF036 spikelet number
33 CQAW13 tiller number
34 AQFE031 grain number
35 AQFE059 seed set percent
36 AQFE060 seed set percent
37 AQFE061 seed set percent
38 AQAI037 leaf area to spikelet number ratio
39 AQEX003 plant height
40 AQGI202 total biomass yield
41 AQFB001 seed dormancy
42 AQFB002 seed dormancy
43 AQFB003 seed dormancy
44 CQG4 leaf rolling time
45 CQN13 nadh-dependent glutamate synthase content
46 AQA017 root length
47 AQG010 panicle number
48 AQG011 spikelet number
49 AQG012 spikelet number
50 CQO3 cold tolerance
51 CQO4 anther length
52 AQDO004 invitro regeneration ability
53 CQN32 leaf senescence
54 AQAX012 carbohydrate content
55 CQZ7 plant height

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000373 6-8 days post-anthesis stage (+)
2 MCP:1000518 seedling development stage (+)
3 MCP:1000520 young inflorescence stage (+)
4 MCP:1000521 mature plant stage (+)
5 PO:0001081 F mature embryo stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000085 lower shoot (+)
2 MCP:1000539 leaf sheath 1.5 cm above the shoot apical meristem (+)
3 MCP:1000540 leaf lamina 1.5 cm above the shoot apical meristem (+)
4 PO:0000001 embryo proper (+)
5 PO:0000050 leaf lamina adaxial epidermis (+)
6 PO:0005004 shoot node (+)
7 PO:0005005 shoot internode (+)
8 PO:0008019 leaf lamina base (+)
9 PO:0009051 spikelet (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020104 leaf sheath (+)
12 PO:0020105 ligule (+)
13 PO:0020106 auricle (+)
14 PO:0020122 inflorescence axis (+)
15 PO:0020148 shoot apical meristem (+)
16 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000285 ectopic root formation at aerial node (+)
2 MCT:1000489 ectopic shoot formation on aerial node (+)
3 MCT:1000491 presence of bristle on epidermis (+)
4 MCT:1000493 presence of wart on epidermis (+)
5 MCT:1000494 distance between stomata (+)
6 TO;1000492 presence of macrohair on epidermis (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Kuijt Suzanne J H; Greco Raffaella; Agalou Adamantia; Shao Jingxia; 't Hoen Corine C J; Overnäs Elin; Osnato Michela; Curiale Serena; Meynard Donaldo; van Gulik Robert; de Faria Maraschin Simone; Atallah Mirna; de Kam Rolf J; Lamers Gerda E M; Guiderdoni Emmanuel; Rossini Laura; Meijer Annemarie H; Ouwerkerk Pieter B F; Interaction between the GRF and KNOX families of transcription factors. Plant physiology 2014:
PMID [24532604]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India