Rice gene details
Searching for LOC_Os04g51460 [glycosyl hydrolases family 16, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g51460.1 281 31 214 PF00722.13 Glyco_hydro_16
2 LOC_Os04g51460.1 281 225 277 PF06955.4 XET_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  6
N22InfloresenceFC
  -3
N22 Root FC
  -6
IR64 Flag-leaf FC
  -2
IR64InfloresenceFC
  68
IR64 Root FC
  -2

Functional details
Molecular Function
Not found
1 GO:0016740 transferase activity (RGAP)
2 GO:0016787 hydrolase activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0008152 metabolic process (RGAP)
3 GO:0008150 biological_process (RGAP)
4 GO:0016043 cellular component organization (RGAP)
5 GO:0009987 cellular process (RGAP)
6 GO:0007165 signal transduction (RGAP)
Cellular component
Not found
1 GO:0005737 cytoplasm (RGAP)
2 GO:0005618 cell wall (RGAP)
3 GO:0005886 plasma membrane (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQE052 100-seed weight
3 AQE053 100-seed weight
4 AQBK005 spikelet number
5 CQC3 spikelet number
6 AQBK014 days to heading
7 AQGD023 hull color
8 AQGD025 hull color
9 AQGD027 hull color
10 AQFA016 grain length to width ratio
11 CQAP2 scent
12 CQAX33 plant height
13 AQCU126 plant height
14 AQCU150 panicle length
15 AQCU162 spikelet number
16 AQCU223 leaf width
17 AQFF047 panicle number
18 AQFF052 panicle number
19 CQAS44 panicle number
20 CQAS46 spikelet density
21 CQAS47 seed number
22 CQAS49 1000-seed weight
23 CQAS51 seed number
24 CQAX21 plant height
25 CQB10 grain number
26 CQB9 plant height
27 CQAC2 blast disease resistance
28 AQCF031 spikelet fertility
29 AQFF031 spikelet number
30 AQFF036 spikelet number
31 CQAW13 tiller number
32 AQFE031 grain number
33 AQFE059 seed set percent
34 AQFE060 seed set percent
35 AQFE061 seed set percent
36 AQFB001 seed dormancy
37 AQFB002 seed dormancy
38 AQFB003 seed dormancy
39 CQG4 leaf rolling time
40 CQN13 nadh-dependent glutamate synthase content
41 AQA017 root length
42 AQG010 panicle number
43 AQG011 spikelet number
44 AQG012 spikelet number
45 CQN32 leaf senescence
46 CQZ7 plant height
47 AQAG010 tiller number
48 AQCY015 1000-seed weight
49 AQAI041 leaf area to spikelet number ratio
50 AQAI053 large vascular bundle number to leaf area ratio
51 AQAI080 grain yield
52 CQR10 flour color
53 CQE34 panicle number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Jeong Jin Seo; Kim Youn Shic; Redillas Mark C F R; Jang Geupil; Jung Harin; Bang Seung Woon; Choi Yang Do; Ha Sun-Hwa; Reuzeau Christophe; Kim Ju-Kon; OsNAC5 overexpression enlarges root diameter in rice plants leading to enhanced drought tolerance and increased grain yield in the field. Plant biotechnology journal 2012:
PMID [23094910]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India