Rice gene details
Searching for LOC_Os04g52230 [ent-kaurene synthase, chloroplast precursor, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g52230.1 756 183 396 PF01397.13 Terpene_synth
2 LOC_Os04g52230.1 756 420 687 PF03936.8 Terpene_synth_C
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  6
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  -1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0003824 catalytic activity (RGAP)
Biological process
Not found
1 GO:0009719 response to endogenous stimulus (RGAP)
2 GO:0007165 signal transduction (RGAP)
3 GO:0009058 biosynthetic process (RGAP)
4 GO:0009987 cellular process (RGAP)
5 GO:0006629 lipid metabolic process (RGAP)
Cellular component
Not found
1 GO:0009536 plastid (RGAP)

Environment details
Not found

Metabolic Pathway details
S. No. Pathway Id Pathway Description
1 PWY-621 sucrose degradation III

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQBK014 days to heading
3 AQGD023 hull color
4 AQGD025 hull color
5 AQGD027 hull color
6 AQFA016 grain length to width ratio
7 CQAP2 scent
8 CQAX33 plant height
9 AQFF047 panicle number
10 AQFF052 panicle number
11 CQAS44 panicle number
12 CQAS46 spikelet density
13 CQAS47 seed number
14 CQAS49 1000-seed weight
15 CQAS51 seed number
16 CQAX21 plant height
17 CQB10 grain number
18 CQB9 plant height
19 CQAC2 blast disease resistance
20 AQCF031 spikelet fertility
21 AQFF031 spikelet number
22 AQFF036 spikelet number
23 CQAW13 tiller number
24 AQFE031 grain number
25 AQFE059 seed set percent
26 AQFE060 seed set percent
27 AQFE061 seed set percent
28 AQFB001 seed dormancy
29 AQFB002 seed dormancy
30 AQFB003 seed dormancy
31 CQG4 leaf rolling time
32 CQN13 nadh-dependent glutamate synthase content
33 AQA017 root length
34 AQG010 panicle number
35 AQG011 spikelet number
36 AQG012 spikelet number
37 CQN32 leaf senescence
38 CQZ7 plant height
39 AQAI041 leaf area to spikelet number ratio
40 AQAI053 large vascular bundle number to leaf area ratio
41 AQAI080 grain yield
42 CQR10 flour color
43 CQE34 panicle number
44 CQB41 spikelet number
45 CQB6 spikelet number
46 AQBY002 root length
47 AQP006 primary branch
48 AQP010 spikelet number
49 CQB8 grain number
50 AQHF002 leaf length
51 AQHF006 leaf width
52 AQHF010 leaf area
53 AQHF030 leaf length
54 AQHF032 leaf width
55 AQHF035 leaf area
56 AQDU001 cold tolerance
57 AQFJ070 grain yield per plant
58 CQAA1 leaf rolloing tolerance
59 CQAW12 root penetration index
60 AQDB002 chlorophyll content

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0007022 imbibition (+)
2 PO:0007115 LP.04 four leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0008037 seedling (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Wu Jiahe; Zhu Chuanfeng; Pang Jinhuan; Zhang Xiangrong; Yang Chunlin; Xia Guixian; Tian Yingchuan; He Chaozu; OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. The Plant journal : for cell and molecular biology 2014:80
PMID [25353370]


2  Qi Weiwei; Sun Fan; Wang Qianjie; Chen Mingluan; Huang Yunqing; Feng Yu-Qi; Luo Xiaojin; Yang Jinshui; Rice ethylene-response AP2/ERF factor OsEATB restricts internode elongation by down-regulating a gibberellin biosynthetic gene. Plant Physiology 2011:157
PMID [21753115]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India