Rice gene details
Searching for LOC_Os04g52310 [metal cation transporter, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g52310.1 365 41 361 PF02535.14 Zip
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
 
N22InfloresenceFC
  -5
N22 Root FC
  -1
IR64 Flag-leaf FC
  -1
IR64InfloresenceFC
  -2
IR64 Root FC
  -3

Functional details
Molecular Function
Not found
1 GO:0005215 transporter activity (RGAP)
Biological process
Not found
1 GO:0008150 biological_process (RGAP)
2 GO:0006810 transport (RGAP)
3 GO:0009987 cellular process (RGAP)
Cellular component
Not found
1 GO:0005623 cell (RGAP)
2 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 MCE:1000173 cadmium nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQBK014 days to heading
3 AQGD023 hull color
4 AQGD025 hull color
5 AQGD027 hull color
6 AQFA016 grain length to width ratio
7 CQAP2 scent
8 CQAX33 plant height
9 AQFF047 panicle number
10 AQFF052 panicle number
11 CQAS44 panicle number
12 CQAS46 spikelet density
13 CQAS47 seed number
14 CQAS49 1000-seed weight
15 CQAS51 seed number
16 CQAX21 plant height
17 CQB10 grain number
18 CQB9 plant height
19 CQAC2 blast disease resistance
20 AQCF031 spikelet fertility
21 AQFF031 spikelet number
22 AQFF036 spikelet number
23 AQFE031 grain number
24 AQFE059 seed set percent
25 AQFE060 seed set percent
26 AQFE061 seed set percent
27 AQFB001 seed dormancy
28 AQFB002 seed dormancy
29 AQFB003 seed dormancy
30 CQG4 leaf rolling time
31 CQN13 nadh-dependent glutamate synthase content
32 AQA017 root length
33 AQG010 panicle number
34 AQG011 spikelet number
35 AQG012 spikelet number
36 CQN32 leaf senescence
37 CQZ7 plant height
38 AQAI041 leaf area to spikelet number ratio
39 AQAI053 large vascular bundle number to leaf area ratio
40 AQAI080 grain yield
41 CQR10 flour color
42 CQE34 panicle number
43 CQB41 spikelet number
44 CQB6 spikelet number
45 AQBY002 root length
46 AQP006 primary branch
47 AQP010 spikelet number
48 CQB8 grain number
49 AQHF002 leaf length
50 AQHF006 leaf width
51 AQHF010 leaf area
52 AQHF030 leaf length
53 AQHF032 leaf width
54 AQHF035 leaf area
55 AQDU001 cold tolerance
56 AQFJ070 grain yield per plant
57 CQAA1 leaf rolloing tolerance
58 CQAW12 root penetration index
59 AQDB002 chlorophyll content
60 AQDQ032 spikelet number
61 AQFF055 panicle number
62 AQFF061 panicle number
63 AQR028 deep root dry weight
64 AQR046 root thickness
65 AQR047 root thickness
66 AQR048 root thickness
67 AQR054 root thickness
68 AQDQ031 panicle number
69 AQDQ030 panicle number
70 AQDQ034 seed weight
71 AQEO011 seed length
72 AQEO021 100-seed weight
73 CQAW11 root number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Sasaki Akimasa; Yamaji Naoki; Ma Jian Feng; Overexpression of OsHMA3 enhances Cd tolerance and expression of Zn transporter genes in rice. Journal of experimental botany 2014:65
PMID [25151617]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India