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Searching for LOC_Os04g56400
[glutamine synthetase, catalytic domain containing protein, expressed ] |
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Basic information [Pfam DB] |
Graphical representation of the protein domains |
S. No. |
Locus Id |
Protein Length |
Doman Start |
Domain End |
Pfam ID |
Domain Name |
1 |
LOC_Os04g56400.1 |
429 |
73 |
153 |
PF03951.11 |
Gln-synt_N |
2 |
LOC_Os04g56400.1 |
429 |
159 |
411 |
PF00120.16 |
Gln-synt_C |
3 |
LOC_Os04g56400.3 |
323 |
73 |
153 |
PF03951.11 |
Gln-synt_N |
4 |
LOC_Os04g56400.3 |
323 |
159 |
307 |
PF00120.16 |
Gln-synt_C |
5 |
LOC_Os04g56400.4 |
312 |
73 |
153 |
PF03951.11 |
Gln-synt_N |
6 |
LOC_Os04g56400.4 |
312 |
159 |
295 |
PF00120.16 |
Gln-synt_C |
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The basic information is from RGAP and Pfam/InterPro databases |
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Gene model (download) 
IR64 N22
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Gene Expression
(RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC |
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N22InfloresenceFC |
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N22 Root FC |
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IR64 Flag-leaf FC |
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IR64InfloresenceFC |
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IR64 Root FC |
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Functional details
Molecular Function
Biological process
Cellular component
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Environment details
S. No. |
EO Id |
EO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
EO:0007097 |
ammonium sulfate regimen |
(+) |
2 |
MCE:1000069 |
dessication/dehydration stress |
(+) |
3 |
MCE:1000294 |
ammonium chloride (NH4) |
(+) |
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Metabolic Pathway details
S. No. |
Pathway Id |
Pathway Description |
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1 |
GLNSYN-PWY |
glutamine biosynthesis I |
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2 |
PWY-3282 |
ammonia assimilation cycle II |
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3 |
PWY-381 |
nitrate reduction II (assimilatory) |
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QTL details
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Plant developmental stage / tissue details
Plant development stage
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCP:1000518 |
seedling development stage |
(+) |
2 |
PO:0007115 |
LP.04 four leaves visible |
(+) |
Plant tissue/organ
Others
S. No. |
PO Id |
PO Description |
Presence(+) or absence(-) of gene expression /activity |
Not found |
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Trait details
S. No. |
TO Id |
TO Description |
Presence(+) or absence(-) of gene expression /activity |
1 |
MCT:1000049 |
glutamine synthetase (GS) activity |
(+) |
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Physical interaction details
Interaction type: protein-protein
Interaction type: protein-DNA
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Related publications [Sorted by year] |
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1 |
Ranathunge Kosala; El-Kereamy Ashraf; Gidda Satinder; Bi Yong-Mei; Rothstein Steven J; AMT1;1 transgenic rice plants with enhanced NH4 + permeability show superior growth and higher yield under optimal and suboptimal NH4 + conditions. Journal of experimental botany 2014:65
PMID [24420570]
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2 |
Funayama Kazuhiro; Kojima Soichi; Tabuchi-Kobayashi Mayumi; Sawa Yuki; Nakayama Yosuke; Hayakawa Toshihiko; Yamaya Tomoyuki; Cytosolic glutamine synthetase1;2 is responsible for the primary assimilation of ammonium in rice roots. Plant & cell physiology 2013:
PMID [23509111]
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3 |
Singh Kamal Krishna; Ghosh Shilpi; Regulation of glutamine synthetase isoforms in two differentially drought-tolerant rice (Oryza sativa L.) cultivars under water deficit conditions. Plant Cell Reports 2012:
PMID [23070303]
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4 |
Wan Liyun; Zhang Jianfei; Zhang Haiwen; Zhang Zhijin; Quan Ruidang; Zhou Shirong; Huang Rongfeng; Transcriptional activation of OsDERF1 in OsERF3 and OsAP2-39 negatively modulates ethylene synthesis and drought tolerance in rice. Plos One 2011:6
PMID [21966459]
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