Rice gene details
Searching for LOC_Os04g56520 [alpha-1,4-glucan-protein synthase, putative, expressed ]
Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g56520.1 348 1 347 PF03214.5 RGP
2 LOC_Os04g56520.2 348 1 347 PF03214.5 RGP
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22
Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -1
N22 Root FC
  -1
IR64 Flag-leaf FC
  4
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
Not found
1 GO:0005515 protein binding (RGAP)
Biological process
Not found
1 GO:0008152 metabolic process (RGAP)
2 GO:0006950 response to stress (RGAP)
3 GO:0009628 response to abiotic stimulus (RGAP)
Cellular component
Not found
1 GO:0005575 cellular_component (RGAP)
2 GO:0005829 cytosol (RGAP)
3 GO:0005794 Golgi apparatus (RGAP)

Environment details
Not found

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQN14 soluble protein content
2 AQBK014 days to heading
3 AQGD023 hull color
4 AQGD025 hull color
5 AQGD027 hull color
6 CQAX21 plant height
7 CQAC2 blast disease resistance
8 CQN13 nadh-dependent glutamate synthase content
9 CQN32 leaf senescence
10 CQE34 panicle number
11 AQBY002 root length
12 AQP006 primary branch
13 AQP010 spikelet number
14 CQB8 grain number
15 AQDQ030 panicle number
16 AQDQ034 seed weight
17 AQEO011 seed length
18 AQEO021 100-seed weight
19 CQAW11 root number
20 AQF098 KClO3 resistance
21 CQAH18 grain shattering
22 AQCF005 spikelet number
23 AQCF006 grain yield
24 AQDQ033 seed weight
25 AQDQ035 seed weight
26 AQDQ036 grain yield per plant
27 AQDQ037 grain yield per plant
28 AQDQ039 plant height
29 AQFF038 spikelet sterility
30 CQH21 root pulling force
31 AQFU010 rice bran percentage
32 AQEI057 leaf senescence
33 AQEI058 leaf senescence
34 AQO039 root thickness
35 AQGI113 biomass yield
36 AQBA005 brown planthopper resistance
37 AQBC044 tiller number
38 AQBE028 tiller number
39 AQBE029 tiller number
40 AQBE061 tiller number
41 DQE4 leaf drying
42 DQE5 leaf drying

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000567 0-1 mm floret length stage (+)
2 MCP:1000568 1-2 mm floret length stage (+)
3 MCP:1000569 2-4 mm floret length stage (+)
4 MCP:1000570 4-6 mm floret length stage (+)
5 MCP:1000571 6-7 mm floret length stage (+)
6 MCP:1000572 7 mm floret length stage (+)
7 PO:0001052 2 leaf expansion stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005005 shoot internode (+)
2 PO:0006340 adult leaf (+)
3 PO:0009005 root (+)
4 PO:0009030 carpel (+)
5 PO:0009037 lemma (+)
6 PO:0009038 palea (+)
7 PO:0009066 anther (+)
8 PO:0020104 leaf sheath (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

1  Sumiyoshi Minako; Inamura Takuya; Nakamura Atsuko; Aohara Tsutomu; Ishii Tadashi; Satoh Shinobu; Iwai Hiroaki; UDP-Arabinopyranose Mutase 3 is Required for Pollen Wall Morphogenesis in Rice (Oryza sativa). Plant & cell physiology 2015:56
PMID [25261533]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India