Rice gene details
Searching for LOC_Os04g57610 [auxin response factor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g57610.1 823 138 243 PF02362.13 B3
2 LOC_Os04g57610.1 823 265 348 PF06507.5 Auxin_resp
3 LOC_Os04g57610.3 819 134 239 PF02362.13 B3
4 LOC_Os04g57610.3 819 261 344 PF06507.5 Auxin_resp
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -2
N22InfloresenceFC
  -2
N22 Root FC
  -3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  -1
IR64 Root FC
  3

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016563 transcription activator activity  
2 GO:0003700 sequence-specific DNA binding transcription factor activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009908 flower development (RGAP)
2 GO:0009719 response to endogenous stimulus (RGAP)
3 GO:0000003 reproduction (RGAP)
4 GO:0009058 biosynthetic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus  
2 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007070 indole acetic acid regimen (+)
2 EO:0007080 jasmonic acid regimen (+)
3 EO:0007105 abscisic acid regimen (+)
4 EO:0007180 2,4-dichlorophenoxyacetic acid (+)
5 EO:0007187 salicylic acid regimen (+)
6 EO:0007204 1-naphthaleneacetic acid (+)
7 MCE:1000023 benzyl aminopurine (BPA) (+)
8 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
9 MCE:1000063 epibrassinolide (+)
10 MCE:1000129 triiodobenzoic acid (+)
11 MCE:1000173 cadmium nutrient regimen (+)
12 MCE:1000239 1-naphthylphthalamic acid (NPA) (+)
13 MCE:1000240 1-naphthoxyacetic acids (1-NOA) (+)
14 MCE:1000245 2′-amino-3′-methoxyflavone (PD98059) (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK014 days to heading
2 AQGD023 hull color
3 AQGD025 hull color
4 AQGD027 hull color
5 CQAX21 plant height
6 CQN32 leaf senescence
7 AQBY002 root length
8 AQP006 primary branch
9 AQP010 spikelet number
10 CQB8 grain number
11 AQDQ030 panicle number
12 AQDQ034 seed weight
13 AQEO011 seed length
14 AQEO021 100-seed weight
15 CQAW11 root number
16 AQCF005 spikelet number
17 AQCF006 grain yield
18 AQDQ033 seed weight
19 AQDQ035 seed weight
20 AQDQ036 grain yield per plant
21 AQDQ037 grain yield per plant
22 AQDQ039 plant height
23 AQFF038 spikelet sterility
24 CQH21 root pulling force
25 AQFU010 rice bran percentage
26 AQEI057 leaf senescence
27 AQEI058 leaf senescence
28 AQO039 root thickness
29 AQGI113 biomass yield
30 AQBA005 brown planthopper resistance
31 AQBC044 tiller number
32 AQBE028 tiller number
33 AQBE029 tiller number
34 AQBE061 tiller number
35 DQE4 leaf drying
36 DQE5 leaf drying
37 CQE35 culm thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005052 plant callus (+)
2 PO:0008037 seedling (+)
3 PO:0008039 stem base (+)
4 PO:0009005 root (+)
5 PO:0009025 vascular leaf (+)
6 PO:0009047 stem (+)
7 PO:0009049 inflorescence (+)
8 PO:0020104 leaf sheath (+)
9 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Zhao Feng Yun; Hu Fan; Zhang Shi Yong; Wang Kai; Zhang Cheng Ren; Liu Tao; MAPKs regulate root growth by influencing auxin signaling and cell cycle-related gene expression in cadmium-stressed rice. Environmental Science and Pollution Research International 2013:
PMID [23430734]


Qi Yanhua; Wang Suikang; Shen Chenjia; Zhang Saina; Chen Yue; Xu Yanxia; Liu Yu; Wu Yunrong; Jiang Dean; OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa). New phytologist 2011:
PMID [21973088]


Domingo Concha; Andrés Fernando; Tharreau Didier; Iglesias Domingo J; Talón Manuel; Constitutive expression of OsGH3.1 reduces auxin content and enhances defense response and resistance to a fungal pathogen in rice. Molecular Plant-Microbe Interactions 2009:22
PMID [19132872]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India