Rice gene details
Searching for LOC_Os04g57810 [GA18008-PA, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g57810.1 266 8 256 PF05093.5 DUF689
2 LOC_Os04g57810.2 266 8 256 PF05093.5 DUF689
3 LOC_Os04g57810.3 187 8 187 PF05093.5 DUF689
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  2
N22 Root FC
  -6
IR64 Flag-leaf FC
  2
IR64InfloresenceFC
  1
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0003674 molecular_function (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006950 response to stress  
2 GO:0010039 response to iron ion  
3 GO:0008150 biological_process (RGAP)
Cellular component
S. No. GO Id GO Description

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007242 iron nutrient regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQBK014 days to heading
2 AQGD023 hull color
3 AQGD025 hull color
4 AQGD027 hull color
5 CQAX21 plant height
6 CQN32 leaf senescence
7 AQBY002 root length
8 AQP006 primary branch
9 AQP010 spikelet number
10 CQB8 grain number
11 AQDQ030 panicle number
12 AQDQ034 seed weight
13 AQEO011 seed length
14 AQEO021 100-seed weight
15 CQAW11 root number
16 AQCF005 spikelet number
17 AQCF006 grain yield
18 AQDQ033 seed weight
19 AQDQ035 seed weight
20 AQDQ036 grain yield per plant
21 AQDQ037 grain yield per plant
22 AQDQ039 plant height
23 AQFF038 spikelet sterility
24 CQH21 root pulling force
25 AQO039 root thickness
26 AQGI113 biomass yield
27 AQBA005 brown planthopper resistance
28 AQBC044 tiller number
29 AQBE028 tiller number
30 AQBE029 tiller number
31 AQBE061 tiller number
32 DQE4 leaf drying
33 DQE5 leaf drying
34 CQE35 culm thickness

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Liang Xuejiao; Qin Lu; Liu Peiwei; Wang Meihuan; Ye Hong; Genes for iron-sulphur cluster assembly are targets of abiotic stress in rice, Oryza sativa. Plant, cell & environment 2014:37
PMID [24028141]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India