Rice gene details
Searching for LOC_Os04g58810 [CAF1 family ribonuclease containing protein, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os04g58810.1 330 57 288 PF04857.12 CAF1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  17
N22InfloresenceFC
  -3
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  5
IR64 Root FC
  -2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0004518 nuclease activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0009414 response to water deprivation  
3 GO:0009737 response to abscisic acid stimulus  
4 GO:0008152 metabolic process (RGAP)
5 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
6 GO:0009056 catabolic process (RGAP)
7 GO:0006950 response to stress (RGAP)
8 GO:0009607 response to biotic stimulus (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005634 nucleus (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (-)
2 EO:0007105 abscisic acid regimen (+)
3 EO:0007173 warm/hot temperature regimen (-)
4 EO:0007174 cold temperature regimen (+)
5 EO:0007373 mechanical damage (+)
6 EO:0007404 drought environment (+)
7 MCE:1000101 severe drought stress in sheltered field (+)
8 MCE:1000116 mild drought (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQGD023 hull color
2 AQGD025 hull color
3 AQGD027 hull color
4 CQE35 culm thickness
5 AQEI059 leaf senescence
6 AQEI121 leaf senescence
7 AQDO003 invitro regeneration ability
8 AQDO007 invitro regeneration ability

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 MCP:1000521 mature plant stage (+)
3 PO:0001054 4 leaf senescence stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0009005 root (+)
3 PO:0009006 shoot system (+)
4 PO:0009051 spikelet (+)
5 PO:0020040 leaf base (+)
6 PO:0020104 leaf sheath (+)
7 PO:0020122 inflorescence axis (+)
8 PO:0025034 leaf (+)
9 PO:0025142 leaf tip (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Chou Wei-Lun; Huang Li-Fen; Fang Jhen-Cheng; Yeh Ching-Hui; Hong Chwan-Yang; Wu Shaw-Jye; Lu Chung-An; Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa. Plant molecular biology 2014:85
PMID [24805883]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India