Rice gene details
Searching for LOC_Os05g01380 [polygalacturonase inhibitor precursor, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g01380.1 310 26 64 PF08263.4 LRRNT_2
2 LOC_Os05g01380.1 310 143 165 PF00560.25 LRR_1
3 LOC_Os05g01380.1 310 167 190 PF00560.25 LRR_1
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  4
N22 Root FC
  -92
IR64 Flag-leaf FC
 
IR64InfloresenceFC
  -14
IR64 Root FC
  -1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0090353 polygalacturonase inhibitor activity  
2 GO:0030234 enzyme regulator activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009620 response to fungus  
2 GO:0007165 signal transduction (RGAP)
3 GO:0006950 response to stress (RGAP)
4 GO:0008152 metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane  
2 GO:0005618 cell wall (RGAP)
3 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007379 Thanatephorus cucumeris (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQY4 germination speed
2 CQE36 ratooning ability
3 AQCK002 seed dormancy
4 CQE37 seed dormancy
5 CQE38 chlorophyll ratio
6 CQF7 rubisco to nitrogen content ratio
7 AQEB002 1000-seed weight
8 AQEB006 1000-seed weight
9 AQEB011 1000-seed weight
10 CQE39 rubisco to chlorophyll ratio
11 AQDX007 osmotic adjustment capacity

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000558 30 days post-heading stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0000003 whole plant (+)
2 PO:0025034 leaf (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
S. No. TO Id TO Description Presence(+) or absence(-) of gene expression /activity
1 MCT:1000004 disease index (+)
2 MCT:1000022 lesion size (+)
3 MCT:1000061 lesion length (+)
4 MCT:1000583 continuity of lesions (+)
5 TO:0000446 leaf drying (+)

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Wang Rui; Lu Liaoxun; Pan Xuebiao; Hu Zongliang; Ling Fei; Yan Yan; Liu Yemao; Lin Yongjun; Functional analysis of OsPGIP1 in rice sheath blight resistance. Plant molecular biology 2014:
PMID [25488398]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India