Rice gene details
Searching for LOC_Os05g02890 [white-brown complex homolog protein 16, putative, expressed ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g02890.1 700 89 279 PF00005.19 ABC_tran
2 LOC_Os05g02890.1 700 393 603 PF01061.16 ABC2_membrane
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  -2
N22 Root FC
  -2
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
  -1
IR64 Root FC
  2

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016787 hydrolase activity (RGAP)
2 GO:0005215 transporter activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009408 response to heat  
2 GO:0009409 response to cold  
3 GO:0009733 response to auxin stimulus  
4 GO:0009735 response to cytokinin stimulus  
5 GO:0009737 response to abscisic acid stimulus  
6 GO:0009739 response to gibberellin stimulus  
7 GO:0009753 response to jasmonic acid stimulus  
8 GO:0010555 response to mannitol stimulus  
9 GO:0006810 transport (RGAP)
10 GO:0009987 cellular process (RGAP)
11 GO:0009056 catabolic process (RGAP)
12 GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0016020 membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007069 gibberellic acid regimen (+)
3 EO:0007070 indole acetic acid regimen (+)
4 EO:0007080 jasmonic acid regimen (+)
5 EO:0007105 abscisic acid regimen (+)
6 EO:0007173 warm/hot temperature regimen (+)
7 EO:0007187 salicylic acid regimen (+)
8 EO:0007290 kinetin regimen (+)
9 EO:0007332 cold air temperature regimen (+)
10 MCE:1000023 benzyl aminopurine (BPA) (+)
11 MCE:1000044 mannitol (+)
12 MCE:1000056 1-aminocyclopropane-1-carboxylic acid (+)
13 MCE:1000063 epibrassinolide (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 CQY4 germination speed
2 CQE36 ratooning ability
3 AQCK002 seed dormancy
4 CQE37 seed dormancy
5 CQE38 chlorophyll ratio
6 CQF7 rubisco to nitrogen content ratio
7 AQEB002 1000-seed weight
8 AQEB006 1000-seed weight
9 AQEB011 1000-seed weight
10 CQE39 rubisco to chlorophyll ratio
11 CQAX34 plant height
12 AQEA227 days to heading
13 AQEA228 days to heading
14 AQEA229 days to heading
15 AQEA230 days to heading
16 AQBV006 tiller angle
17 AQBK013 days to heading
18 CQAS60 seed number
19 CQAS61 seed set percent
20 CQAS64 seed number
21 CQAS62 1000-seed weight

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
2 PO:0007106 LP.03 three leaves visible (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009005 root (+)
2 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Matsuda Shuichi; Funabiki Atsushi; Furukawa Kaoru; Komori Nozomi; Koike Masanori; Tokuji Yoshihiko; Takamure Itsuro; Kato Kiyoaki; Genome-wide analysis and expression profiling of half-size ABC protein subgroup G in rice in response to abiotic stress and phytohormone treatments. Molecular genetics and genomics 2012:287
PMID [22996334]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India