Rice gene details
Searching for LOC_Os05g04330 [DNA methyltransferase protein, putative, expressed ]

Basic information [Interpro DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Interpro ID Domain Name
1 LOC_Os05g04330.1 681 44 48 seg
2 LOC_Os05g04330.1 681 248 536 S-adenosyl-L-methionine-dependent methyltransferas
3 LOC_Os05g04330.1 681 376 660 DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED
4 LOC_Os05g04330.1 681 542 657 no description
5 LOC_Os05g04330.1 681 542 657 S-adenosyl-L-methionine-dependent methyltransferas
6 LOC_Os05g04330.1 681 615 626 seg
7 LOC_Os05g04330.1 681 666 677 seg
8 LOC_Os05g04330.2 668 44 48 seg
9 LOC_Os05g04330.2 668 248 536 S-adenosyl-L-methionine-dependent methyltransferas
10 LOC_Os05g04330.2 668 376 660 DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED
11 LOC_Os05g04330.2 668 542 657 no description
12 LOC_Os05g04330.2 668 542 657 S-adenosyl-L-methionine-dependent methyltransferas
13 LOC_Os05g04330.2 668 615 626 seg
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  -1
N22InfloresenceFC
  1
N22 Root FC
  3
IR64 Flag-leaf FC
  3
IR64InfloresenceFC
  1
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016740 transferase activity (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0006970 response to osmotic stress  
2 GO:0008152 metabolic process (RGAP)
3 GO:0009987 cellular process (RGAP)
4 GO:0040029 regulation of gene expression, epigenetic (RGAP)
5 GO:0006259 DNA metabolic process (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005575 cellular_component (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007048 sodium chloride regimen (+)
2 EO:0007332 cold air temperature regimen (+)
3 MCE:1000016 polyethylene glycol (PEG) treatment (+)
4 MCE:1000069 dessication/dehydration stress (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK002 seed dormancy
2 CQE37 seed dormancy
3 CQE38 chlorophyll ratio
4 CQF7 rubisco to nitrogen content ratio
5 AQEB002 1000-seed weight
6 AQEB006 1000-seed weight
7 AQEB011 1000-seed weight
8 CQE39 rubisco to chlorophyll ratio
9 CQAX34 plant height
10 AQEA227 days to heading
11 AQEA228 days to heading
12 AQEA229 days to heading
13 AQEA230 days to heading
14 AQBV006 tiller angle
15 AQBK013 days to heading
16 CQAS60 seed number
17 CQAS61 seed set percent
18 CQAS64 seed number
19 CQAS62 1000-seed weight
20 CQAD3 allelopathic effect
21 AQDZ012 lodging incidence
22 AQGB025 grain width
23 AQGB026 grain width
24 AQGB027 grain width
25 AQGB028 grain width
26 AQGB029 grain width
27 AQGB030 grain width
28 AQGB031 grain width
29 AQGB032 grain width
30 AQGB043 grain length to width ratio
31 AQGB044 grain length to width ratio
32 AQGB045 grain length to width ratio
33 AQGB046 grain length to width ratio
34 AQGB047 grain length to width ratio
35 AQGB048 grain length to width ratio
36 AQGB049 grain length to width ratio
37 AQGB050 grain length to width ratio
38 DQC9 penetrated root number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000166 5-10 days post-anthesis stage (+)
2 MCP:1000169 inflorescence 0.5-2mm stage (+)
3 MCP:1000170 inflorescence 2.1-5mm stage (+)
4 MCP:1000171 inflorescence 5.1-10mm stage (+)
5 MCP:1000172 inflorescence 0-3cm stage (+)
6 MCP:1000173 inflorescence 5-10cm stage (+)
7 MCP:1000174 inflorescence 10-15cm stage (+)
8 MCP:1000175 inflorescence 15-22cm stage (+)
9 MCP:1000176 inflorescence 22-30cm stage (+)
10 MCP:1000177 0-2 days post-anthesis stage (+)
11 MCP:1000180 11-20 days post-anthesis stage (+)
12 MCP:1000181 21-29 days post-anthesis stage (+)
13 MCP:1000212 3-4 days post-anthesis stage (+)
14 MCP:1000518 seedling development stage (+)
15 MCP:1000520 young inflorescence stage (+)
16 PO:0007014 booting (+)
17 PO:0007016 4 flowering (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0005004 shoot node (+)
2 PO:0006339 juvenile leaf (+)
3 PO:0006340 adult leaf (+)
4 PO:0008037 seedling (+)
5 PO:0009005 root (+)
6 PO:0009006 shoot system (+)
7 PO:0009010 seed (+)
8 PO:0009047 stem (+)
9 PO:0009049 inflorescence (+)
10 PO:0020039 leaf lamina (+)
11 PO:0020104 leaf sheath (+)
12 PO:0020148 shoot apical meristem (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

Ahmad F; Huang X; Lan H X; Huma T; Bao Y M; Huang J; Zhang H S; Comprehensive gene expression analysis of the DNA (cytosine-5) methyltransferase family in rice (Oryza sativa L.). Genetics and molecular research : GMR 2014:13
PMID [25061741]


Sharma Rita; Mohan Singh R K; Malik Garima; Deveshwar Priyanka; Tyagi Akhilesh K; Kapoor Sanjay; Kapoor Meenu; Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress. FEBS Journal 2009:276
PMID [19788421]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India