Rice gene details
Searching for LOC_Os05g04460 [OsWAK56 - OsWAK receptor-like protein kinase ]

Basic information [Pfam DB] Graphical representation of the protein domains
S. No. Locus Id Protein Length Doman Start Domain End Pfam ID Domain Name
1 LOC_Os05g04460.1 727 389 656 PF00069.17 Pkinase
  The basic information is from RGAP and Pfam/InterPro databases

Gene model (download)
IR64 N22

Gene Expression (RNASeq data) in two varieties N22 & IR64 [FC=Fold Change]
N22 Flag-leaf FC
  1
N22InfloresenceFC
  1
N22 Root FC
  1
IR64 Flag-leaf FC
  1
IR64InfloresenceFC
 
IR64 Root FC
  1

Functional details
Molecular Function
S. No. GO Id GO Description
1 GO:0016301 kinase activity (RGAP)
2 GO:0000166 nucleotide binding (RGAP)
3 GO:0005488 binding (RGAP)
Biological process
S. No. GO Id GO Description
1 GO:0009409 response to cold  
2 GO:0016043 cellular component organization (RGAP)
3 GO:0009653 anatomical structure morphogenesis (RGAP)
4 GO:0016049 cell growth (RGAP)
5 GO:0006464 protein modification process (RGAP)
6 GO:0009791 post-embryonic development (RGAP)
Cellular component
S. No. GO Id GO Description
1 GO:0005886 plasma membrane (RGAP)

Environment details
S. No. EO Id EO Description Presence(+) or absence(-) of gene expression /activity
1 EO:0007174 cold temperature regimen (+)

Metabolic Pathway details
Not found

QTL details
S. No. QTL Id QTL Associated Trait
1 AQCK002 seed dormancy
2 CQE37 seed dormancy
3 CQE38 chlorophyll ratio
4 CQF7 rubisco to nitrogen content ratio
5 AQEB002 1000-seed weight
6 AQEB006 1000-seed weight
7 AQEB011 1000-seed weight
8 CQE39 rubisco to chlorophyll ratio
9 CQAX34 plant height
10 AQEA227 days to heading
11 AQEA228 days to heading
12 AQEA229 days to heading
13 AQEA230 days to heading
14 AQBV006 tiller angle
15 AQBK013 days to heading
16 CQAS60 seed number
17 CQAS61 seed set percent
18 CQAS64 seed number
19 CQAS62 1000-seed weight
20 CQAD3 allelopathic effect
21 AQDZ012 lodging incidence
22 AQGB025 grain width
23 AQGB026 grain width
24 AQGB027 grain width
25 AQGB028 grain width
26 AQGB029 grain width
27 AQGB030 grain width
28 AQGB031 grain width
29 AQGB032 grain width
30 AQGB043 grain length to width ratio
31 AQGB044 grain length to width ratio
32 AQGB045 grain length to width ratio
33 AQGB046 grain length to width ratio
34 AQGB047 grain length to width ratio
35 AQGB048 grain length to width ratio
36 AQGB049 grain length to width ratio
37 AQGB050 grain length to width ratio
38 DQC9 penetrated root number

Plant developmental stage / tissue details
Plant development stage
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 MCP:1000518 seedling development stage (+)
Plant tissue/organ
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
1 PO:0009006 shoot system (+)
Others
S. No. PO Id PO Description Presence(+) or absence(-) of gene expression /activity
Not found

Trait details
Not found

Physical interaction details
Interaction type: protein-protein
Not found
Interaction type: protein-DNA
Not found
Related publications [Sorted by year]

de Oliveira Luiz Felipe Valter; Christoff Ana Paula; de Lima Júlio Cesar; de Ross Bruno Comparsi Feijó; Sachetto-Martins Gilberto; Margis-Pinheiro Marcia; Margis Rogerio; The Wall-associated Kinase gene family in rice genomes. Plant science : an international journal of experimental plant biology 2014:229
PMID [25443845]


Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi-110021, India